CB250343

Overview
NameCB250343
Unique NameCB250343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2108 contig Csv1_Contig2108:261..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_RHIL3 (Flavoprotein wrbA OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=wrbA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.666e-25
Identity = 64/140 (45.71%), Postives = 80/140 (57.14%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKL 418
            PI T +ELA+ D  + G  TRFGT+A+Q + F D TGGLW   +L GK   +F              L  I   +H GM+   + Y F  G    E+VKGGSPYGA T   GDGSRQP+E+ELE A +QG H A +A KL
Sbjct:   59 PIATVDELADYDAIIVGAGTRFGTVASQMRNFWDQTGGLWFAGKLVGKLGSVFTSSATQHGGQESTILGFIPTFLHQGMVVAGLPYAF-QGQMGTEEVKGGSPYGASTITNGDGSRQPSEIELEGAKYQGAHVAKLAAKL 197          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_BURCM (Flavoprotein wrbA OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=wrbA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.666e-25
Identity = 62/140 (44.29%), Postives = 80/140 (57.14%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T +EL   D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+H GM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH A +A KL
Sbjct:   60 PVATVDELPNYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHQGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELAVKL 198          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_AGRT5 (Flavoprotein wrbA OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=wrbA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.666e-25
Identity = 62/140 (44.29%), Postives = 81/140 (57.86%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T +ELAE D  + G  TRFGT+A+Q + F D TGGLW + +L GK    F              L  I   +HHGM  V + Y F  G   ++++KGGSPYGA T   GDGSRQP+ +EL+ A +QG H A +A KL
Sbjct:   59 PVATVDELAEYDAIIVGAGTRFGTVASQMRNFWDQTGGLWFSGKLVGKVGSAFTSSATQHGGQESTILGFIPTFLHHGMAVVGLPYAF-QGQMGVDEIKGGSPYGASTITDGDGSRQPSAIELDAARYQGAHVAKLAAKL 197          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_AZOSE (Flavoprotein wrbA OS=Azoarcus sp. (strain EbN1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.547e-25
Identity = 62/140 (44.29%), Postives = 78/140 (55.71%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+    +L EAD  +FG PTRFG M AQ + FLD TGGLW    L GK   +F              L+    L+H GM+ V + YT    M  M+++ GGSPYGA T A GDGSR P++ E+E A  QG+H A IA  L
Sbjct:   63 PVAKTEQLPEADAIIFGTPTRFGNMCAQMRNFLDQTGGLWMKGSLVGKVGSVFTSTATQHGGQESTILSTHITLLHQGMVLVGLPYTEKRQM-GMDEILGGSPYGAATIAGGDGSRMPSQTEIEMAKFQGRHVAEIASAL 201          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_XANP2 (Flavoprotein wrbA OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=wrbA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.013e-24
Identity = 65/142 (45.77%), Postives = 80/142 (56.34%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            PI T  ELAE D  + G  TRFG MA+Q   FLD  GGLW    L GK  G F               + IT L+H GM+ V + Y +GA M  +++V GGSPYGA T  G DGSRQP+ +EL+ A +QG+  A  A KL G
Sbjct:   59 PIATVAELAEYDAIIVGVGTRFGRMASQMANFLDQAGGLWARGALNGKVGGAFTSTATQHGGQEVTLFSIITNLMHFGMVIVGLDYGYGAQM-TLDEVTGGSPYGATTITGGDGSRQPSAIELDGARYQGRKIAETAIKLHG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_PARDP (Flavoprotein wrbA OS=Paracoccus denitrificans (strain Pd 1222) GN=wrbA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.013e-24
Identity = 63/142 (44.37%), Postives = 79/142 (55.63%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGD---GSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T  ELA+ D  + G PTRFG MA+Q K FLD TGGLW   +L GK   +F               +  T L+H GMI V + Y+F  G   M+++ GGSPYGA T A D   G RQP+  EL+ A  QG+H A IA  L
Sbjct:   59 PVATVGELADYDAIIIGTPTRFGNMASQMKNFLDQTGGLWAEDRLVGKVGSVFTSTGSQHGGQETTIQSTHTVLLHLGMIVVGLPYSF-KGQMRMDEITGGSPYGASTLADDGDGGDRQPSANELDGARFQGRHVAEIAAAL 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_CHRSD (Flavoprotein wrbA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=wrbA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.013e-24
Identity = 65/138 (47.10%), Postives = 81/138 (58.70%), Query Frame = 2
Query:   14 PNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ LAE D  V G PTRFG MA+Q + F D TGGLW   +L GK  G F               +  T L+HHGM  V + Y+  A + E+++V GG+PYGA T A GDGSRQP+E EL  A  QG+H A +A KL G
Sbjct:   65 PSVLAEYDAIVVGTPTRFGNMASQMRNFWDKTGGLWAQGKLIGKLGGAFTSTASQHGGQETTLTSIHTTLLHHGMAVVGVPYSCPA-LTELDEVSGGTPYGATTIAGGDGSRQPSENELTIARFQGQHIAEMAAKLAG 201          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_GEOLS (Flavoprotein wrbA OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=wrbA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.728e-24
Identity = 64/140 (45.71%), Postives = 79/140 (56.43%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P  T   LAEAD  +FG PTRFG MAAQ + FLD TG LW +  L GK   +F               +  + L+HHGMI V + YT    +  M+++ GGSPYGA T A GDGSR+P+E EL  A  QG H A I  +L
Sbjct:   64 PTATVERLAEADAIIFGTPTRFGNMAAQMRNFLDQTGKLWLSGGLVGKVGSVFASTATQHGGQETTITSFHSTLLHHGMIIVGVPYT-EQRLLTMDEISGGSPYGATTLAGGDGSRRPSENELAIARFQGAHVAKITARL 202          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_BRASO (Flavoprotein wrbA OS=Bradyrhizobium sp. (strain ORS278) GN=wrbA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.728e-24
Identity = 66/142 (46.48%), Postives = 78/142 (54.93%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            PI    ELA+ D  + G  TRFG MA+Q   FLD  GGLW    L GK  G F               T IT L+H GM  V + Y F AG  ++++V GGSPYGA T  G DGSRQP+E EL  A +QG+  A  AKKL G
Sbjct:   59 PIAKIEELADYDAIIVGTGTRFGRMASQMANFLDQAGGLWAKGALNGKVGGAFTSTATQHGGQETTLFTIITNLLHFGMTIVGLNYGF-AGQMKLDEVTGGSPYGATTITGGDGSRQPSENELAGARYQGRVIAETAKKLHG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_BURA4 (Flavoprotein wrbA OS=Burkholderia ambifaria (strain MC40-6) GN=wrbA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.947e-24
Identity = 61/140 (43.57%), Postives = 79/140 (56.43%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T +EL   D  +FG PTRFG MA Q + FLD TG LW    L GK   +F               +  T L+H GM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH A +A KL
Sbjct:   60 PVATVDELPNYDAIIFGTPTRFGNMAGQMRTFLDQTGCLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHQGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELAVKL 198          
The following BLAST results are available for this feature:
BLAST of CB250343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_RHIL32.666e-2545.71Flavoprotein wrbA OS=Rhizobium leguminosarum bv. v... [more]
WRBA_BURCM2.666e-2544.29Flavoprotein wrbA OS=Burkholderia ambifaria (strai... [more]
WRBA_AGRT52.666e-2544.29Flavoprotein wrbA OS=Agrobacterium tumefaciens (st... [more]
WRBA_AZOSE4.547e-2544.29Flavoprotein wrbA OS=Azoarcus sp. (strain EbN1) GN... [more]
WRBA_XANP21.013e-2445.77Flavoprotein wrbA OS=Xanthobacter autotrophicus (s... [more]
WRBA_PARDP1.013e-2444.37Flavoprotein wrbA OS=Paracoccus denitrificans (str... [more]
WRBA_CHRSD1.013e-2447.10Flavoprotein wrbA OS=Chromohalobacter salexigens (... [more]
WRBA_GEOLS1.728e-2445.71Flavoprotein wrbA OS=Geobacter lovleyi (strain ATC... [more]
WRBA_BRASO1.728e-2446.48Flavoprotein wrbA OS=Bradyrhizobium sp. (strain OR... [more]
WRBA_BURA42.947e-2443.57Flavoprotein wrbA OS=Burkholderia ambifaria (strai... [more]

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Properties
Property NameValue
Genbank descriptionEST0133 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ197 similar to 1,4-benzoquinone reductase (acc# NP_194457), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250343 ID=CB250343; Name=CB250343; organism=Citrus sinensis; type=EST; length=481bp
ACCTATTATTACCCCCAACGAACTTGCTGAGGCTGATGGGTTTGTTTTTG
GCTTCCCAACAAGATTTGGAACGATGGCTGCTCAATTTAAAGCATTTTTA
GATGCTACTGGTGGTCTATGGAGGACACAACAGCTCGCTGGCAAACCTGC
TGGGATGTTCTACAGCACTGGGTCACAAGGTGGTGGACAAGAGACTACAG
CGTTGACGGCAATTACTCAGCTTGTTCACCATGGGATGATATTTGTTCCT
ATTGGATACACATTTGGTGCTGGCATGTTTGAGATGGAGAAAGTGAAAGG
TGGAAGTCCCTACGGTGCAGGAACTTTTGCTGGAGACGGCTCGAGACAGC
CAACTGAGCTTGAGTTGGAGCAAGCTTTCCACCAGGGAAAACACACTGCG
GGCATTGCAAAGAAGCTGAAGGGAAGTGCTTAAATATTTCAATTTACAAT
ACAACCATTAGGTGGACTTATTCCATTCTTT
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