CB250344

Overview
NameCB250344
Unique NameCB250344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length289
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.196e-17
Identity = 40/96 (41.67%), Postives = 65/96 (67.71%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            N+VQ R+++RA+DVR QL+  +++ +++  S+     KIRKAITAG+F++ ++ D    Y+T+      + HP+S LF+  P WV+Y ELV T+KE
Sbjct:  867 NYVQHRTMKRARDVRDQLVGLLERVEIETKSSTDTI-KIRKAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETPRWVVYFELVFTSKE 961          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.991e-15
Identity = 38/96 (39.58%), Postives = 63/96 (65.62%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            NF+  R L+RA+DV+ Q+     K  L ++S   +   IRK   +GFF +AA++D Q GY+T+     V IHPSS+L+ ++ ++V+YH +V+T++E
Sbjct:  983 NFLHFRHLKRARDVKSQISMIFKKIGLKLISCHSDPDLIRKTFVSGFFMNAAKRDSQVGYKTINGGTEVGIHPSSSLYGKEYEYVMYHSIVLTSRE 1078          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.532e-14
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286
            NFV +R+++ A +VR+QL+  M ++ L + S   N    +  IRKA+ AG+F   A  +    Y T+ +NQ V++HPS+ L   +P+WVIY+E V+TT+
Sbjct:  578 NFVNNRAMKSADNVRQQLVRIMSRFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTTR 675          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.257e-13
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSAL--FQRQPDWVIYHELVMTTKE 289
            +FVQ +SL RA+D+R QLL+ +   K+ V+S+GK++  I+K I +GF   AA+      Y  L     V +HP+SAL      P +V+YHEL+MT+KE
Sbjct:  865 HFVQYKSLVRARDIRDQLLTILKSQKIPVISSGKDWDIIKKCICSGFAHQAAKITGLRNYVHLKTGVSVQLHPTSALHGLGDLPPYVVYHELLMTSKE 962          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_CAEEL (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.800e-13
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286
            NF+  R+++ A  VR QL   MDKY L  +S        +  IRKA+ AGFF   A  +    Y T+ +NQ V +HPS+ L   +P+W +Y+E V+TTK
Sbjct:  591 NFINYRTMKTADTVRTQLSRVMDKYNLRRVSTDFKSRDYYLNIRKALVAGFFMQVAHLERSGHYVTVKDNQLVNLHPSTVL-DHKPEWALYNEFVLTTK 688          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.656e-13
Identity = 35/98 (35.71%), Postives = 61/98 (62.24%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQR--QPDWVIYHELVMTTKE 289
            +F+ ++++R+ ++VR QL   M + ++ + S G ++  +RK I A +F  AA+      Y  +    P ++HP+S+LF     PD+++YHELVMTTKE
Sbjct: 1031 HFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKE 1128          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.656e-13
Identity = 35/98 (35.71%), Postives = 61/98 (62.24%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQR--QPDWVIYHELVMTTKE 289
            +F+ ++++R+ ++VR QL   M + ++ + S G ++  +RK I A +F  AA+      Y  +    P ++HP+S+LF     PD+++YHELVMTTKE
Sbjct: 1031 HFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKE 1128          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.237e-13
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQR--QPDWVIYHELVMTTKE 289
            N++  ++L++ ++VR QL   M   KL ++S G  +  +RK I + +F +AAR      Y  +    P ++HP+SALF     PD+V+YHEL+MT KE
Sbjct:  941 NYLHVKALKKVREVRAQLKEIMQDLKLPLISNGSEWDIVRKCICSAYFHNAARLKGIGEYVNVRTGIPCFLHPTSALFGMGFMPDYVVYHELIMTAKE 1038          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_PONAB (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286
            NF+  RSL  A +VR+QL   MD++ L   S        +  IRKA+  G+F   A  +    Y T+ +NQ V +HPS+ L   +P+WV+Y+E V+TTK
Sbjct:  647 NFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL-DHKPEWVLYNEFVLTTK 744          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286
            NF+  RSL  A +VR+QL   MD++ L   S        +  IRKA+  G+F   A  +    Y T+ +NQ V +HPS+ L   +P+WV+Y+E V+TTK
Sbjct:  647 NFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL-DHKPEWVLYNEFVLTTK 744          
The following BLAST results are available for this feature:
BLAST of CB250344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DHX16_CAEEL3.196e-1741.67Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP22_YEAST2.991e-1539.58Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_ARATH2.532e-1439.39Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_YEAST1.257e-1342.86Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_CAEEL2.800e-1340.40Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_HUMAN3.656e-1335.71Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_BOVIN3.656e-1335.71Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
MOG1_CAEEL6.237e-1337.76Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_PONAB8.146e-1339.39Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_MOUSE8.146e-1339.39Putative pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionEST0134 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ198 similar to ATP-dependent RNA helicase (acc# NP_189288), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250344 ID=CB250344; Name=CB250344; organism=Citrus sinensis; type=EST; length=289bp
GAACTTTGTTCAGTCTCGATCCTTGAGGAGGGCACAGGATGTCAGAAAAC
AACTTCTCAGCACTATGGATAAATATAAGTTGGATGTTATGAGTGCTGGA
AAGAATTTCACGAAGATAAGGAAGGCAATTACAGCAGGATTCTTTTTTCA
TGCTGCTAGAAAGGACCCACAGGAGGGCTATCGGACCTTAGTTGAGAATC
AGCCGGTTTATATCCACCCAAGCAGTGCACTATTTCAGAGACAACCTGAT
TGGGTCATCTACCATGAGCTCGTCATGACTACTAAGGAG
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