CB250344
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 3.196e-17 Identity = 40/96 (41.67%), Postives = 65/96 (67.71%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 N+VQ R+++RA+DVR QL+ +++ +++ S+ KIRKAITAG+F++ ++ D Y+T+ + HP+S LF+ P WV+Y ELV T+KE Sbjct: 867 NYVQHRTMKRARDVRDQLVGLLERVEIETKSSTDTI-KIRKAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETPRWVVYFELVFTSKE 961
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.991e-15 Identity = 38/96 (39.58%), Postives = 63/96 (65.62%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 NF+ R L+RA+DV+ Q+ K L ++S + IRK +GFF +AA++D Q GY+T+ V IHPSS+L+ ++ ++V+YH +V+T++E Sbjct: 983 NFLHFRHLKRARDVKSQISMIFKKIGLKLISCHSDPDLIRKTFVSGFFMNAAKRDSQVGYKTINGGTEVGIHPSSSLYGKEYEYVMYHSIVLTSRE 1078
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.532e-14 Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286 NFV +R+++ A +VR+QL+ M ++ L + S N + IRKA+ AG+F A + Y T+ +NQ V++HPS+ L +P+WVIY+E V+TT+ Sbjct: 578 NFVNNRAMKSADNVRQQLVRIMSRFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTTR 675
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 1.257e-13 Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSAL--FQRQPDWVIYHELVMTTKE 289 +FVQ +SL RA+D+R QLL+ + K+ V+S+GK++ I+K I +GF AA+ Y L V +HP+SAL P +V+YHEL+MT+KE Sbjct: 865 HFVQYKSLVRARDIRDQLLTILKSQKIPVISSGKDWDIIKKCICSGFAHQAAKITGLRNYVHLKTGVSVQLHPTSALHGLGDLPPYVVYHELLMTSKE 962
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_CAEEL (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.800e-13 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286 NF+ R+++ A VR QL MDKY L +S + IRKA+ AGFF A + Y T+ +NQ V +HPS+ L +P+W +Y+E V+TTK Sbjct: 591 NFINYRTMKTADTVRTQLSRVMDKYNLRRVSTDFKSRDYYLNIRKALVAGFFMQVAHLERSGHYVTVKDNQLVNLHPSTVL-DHKPEWALYNEFVLTTK 688
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 3.656e-13 Identity = 35/98 (35.71%), Postives = 61/98 (62.24%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQR--QPDWVIYHELVMTTKE 289 +F+ ++++R+ ++VR QL M + ++ + S G ++ +RK I A +F AA+ Y + P ++HP+S+LF PD+++YHELVMTTKE Sbjct: 1031 HFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKE 1128
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.656e-13 Identity = 35/98 (35.71%), Postives = 61/98 (62.24%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQR--QPDWVIYHELVMTTKE 289 +F+ ++++R+ ++VR QL M + ++ + S G ++ +RK I A +F AA+ Y + P ++HP+S+LF PD+++YHELVMTTKE Sbjct: 1031 HFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKE 1128
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 6.237e-13 Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQR--QPDWVIYHELVMTTKE 289 N++ ++L++ ++VR QL M KL ++S G + +RK I + +F +AAR Y + P ++HP+SALF PD+V+YHEL+MT KE Sbjct: 941 NYLHVKALKKVREVRAQLKEIMQDLKLPLISNGSEWDIVRKCICSAYFHNAARLKGIGEYVNVRTGIPCFLHPTSALFGMGFMPDYVVYHELIMTAKE 1038
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_PONAB (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13 Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286 NF+ RSL A +VR+QL MD++ L S + IRKA+ G+F A + Y T+ +NQ V +HPS+ L +P+WV+Y+E V+TTK Sbjct: 647 NFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL-DHKPEWVLYNEFVLTTK 744
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13 Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286 NF+ RSL A +VR+QL MD++ L S + IRKA+ G+F A + Y T+ +NQ V +HPS+ L +P+WV+Y+E V+TTK Sbjct: 647 NFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL-DHKPEWVLYNEFVLTTK 744 The following BLAST results are available for this feature:
BLAST of CB250344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250344 ID=CB250344; Name=CB250344; organism=Citrus sinensis; type=EST; length=289bpback to top |