CB250344
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13 Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286 NF+ RSL A +VR+QL MD++ L S + IRKA+ G+F A + Y T+ +NQ V +HPS+ L +P+WV+Y+E V+TTK Sbjct: 647 NFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL-DHKPEWVLYNEFVLTTK 744
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12 Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSA---GKN-FTKIRKAITAGFFFHAARKDPQ-EGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286 +F+ R+L A +VRKQL TM++ +++++S KN + IR+A+ +GFF A+K + Y T+ +NQ V +HPS L P+WV+Y+E V+TTK Sbjct: 584 HFLSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSCGL-SVTPEWVVYNEFVLTTK 682
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP43_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae GN=PRP43 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.815e-12 Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAG----KNFTKIRKAITAGFFFHAARK-DPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286 +++ RSL A ++R QL M++Y L++ + K F IRKA+ +GFF A+K +GY T+ +NQ V IHPS+ L +WVIY+E V+T+K Sbjct: 606 HYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVL-GHDAEWVIYNEFVLTSK 704
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.536e-11 Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286 NF+ R++++A VR QL + ++KL ++S N + I+K I AGFF A+ + + Y TL + Q V HPS+ L R+P++ IY+E V+T++ Sbjct: 574 NFLNHRAIKQADSVRSQLARILTRFKLPLVSGDVNSKFYYENIKKCIAAGFFMQVAKCEKKNIYFTLGDEQSVIFHPSTGL-TRRPEFCIYNEFVLTSE 671
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 5.838e-11 Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGK-NFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286 NF+ R+L+ D+RKQL K ++ S+ + N + + +G+ + A P YRT++ NQ + IHPSS+LF ++ + ++YHELV TTK Sbjct: 597 NFINRRALKTILDIRKQLREHCLKDGWELNSSPEVNSENLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTK 692
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11 Identity = 33/96 (34.38%), Postives = 60/96 (62.50%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALF-QRQPDWVIYHELVMTTK 286 +F+ + L RA VR+QL + K+++ S+ + + + I +GFF +AAR YRT+ ++ ++IHP+S L+ ++ P WVIY+E++ T+K Sbjct: 568 HFLNYKGLVRAATVREQLKKLLVKFQVPKKSSEGDPDPVLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSK 663 The following BLAST results are available for this feature:
BLAST of CB250344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB250344 ID=CB250344; Name=CB250344; organism=Citrus sinensis; type=EST; length=289bpback to top |