CB250344

Overview
NameCB250344
Unique NameCB250344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length289
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286
            NF+  RSL  A +VR+QL   MD++ L   S        +  IRKA+  G+F   A  +    Y T+ +NQ V +HPS+ L   +P+WV+Y+E V+TTK
Sbjct:  647 NFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL-DHKPEWVLYNEFVLTTK 744          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12
Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSA---GKN-FTKIRKAITAGFFFHAARKDPQ-EGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286
            +F+  R+L  A +VRKQL  TM++ +++++S     KN +  IR+A+ +GFF   A+K    + Y T+ +NQ V +HPS  L    P+WV+Y+E V+TTK
Sbjct:  584 HFLSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSCGL-SVTPEWVVYNEFVLTTK 682          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP43_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae GN=PRP43 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.815e-12
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAG----KNFTKIRKAITAGFFFHAARK-DPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286
            +++  RSL  A ++R QL   M++Y L++ +      K F  IRKA+ +GFF   A+K    +GY T+ +NQ V IHPS+ L     +WVIY+E V+T+K
Sbjct:  606 HYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVL-GHDAEWVIYNEFVLTSK 704          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.536e-11
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKN----FTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286
            NF+  R++++A  VR QL   + ++KL ++S   N    +  I+K I AGFF   A+ + +  Y TL + Q V  HPS+ L  R+P++ IY+E V+T++
Sbjct:  574 NFLNHRAIKQADSVRSQLARILTRFKLPLVSGDVNSKFYYENIKKCIAAGFFMQVAKCEKKNIYFTLGDEQSVIFHPSTGL-TRRPEFCIYNEFVLTSE 671          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.838e-11
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGK-NFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK 286
            NF+  R+L+   D+RKQL     K   ++ S+ + N   +  +  +G+  + A   P   YRT++ NQ + IHPSS+LF ++ + ++YHELV TTK
Sbjct:  597 NFINRRALKTILDIRKQLREHCLKDGWELNSSPEVNSENLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTK 692          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 33/96 (34.38%), Postives = 60/96 (62.50%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALF-QRQPDWVIYHELVMTTK 286
            +F+  + L RA  VR+QL   + K+++   S+  +   + + I +GFF +AAR      YRT+ ++  ++IHP+S L+ ++ P WVIY+E++ T+K
Sbjct:  568 HFLNYKGLVRAATVREQLKKLLVKFQVPKKSSEGDPDPVLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSK 663          
The following BLAST results are available for this feature:
BLAST of CB250344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DHX15_HUMAN8.146e-1339.39Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_SCHPO1.389e-1240.00Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP43_YEAST1.815e-1240.00Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_DICDI1.536e-1136.36Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRH1_SCHPO5.838e-1136.46Probable ATP-dependent RNA helicase prh1 OS=Schizo... [more]
DHX35_PONAB9.957e-1134.38Probable ATP-dependent RNA helicase DHX35 OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionEST0134 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ198 similar to ATP-dependent RNA helicase (acc# NP_189288), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250344 ID=CB250344; Name=CB250344; organism=Citrus sinensis; type=EST; length=289bp
GAACTTTGTTCAGTCTCGATCCTTGAGGAGGGCACAGGATGTCAGAAAAC
AACTTCTCAGCACTATGGATAAATATAAGTTGGATGTTATGAGTGCTGGA
AAGAATTTCACGAAGATAAGGAAGGCAATTACAGCAGGATTCTTTTTTCA
TGCTGCTAGAAAGGACCCACAGGAGGGCTATCGGACCTTAGTTGAGAATC
AGCCGGTTTATATCCACCCAAGCAGTGCACTATTTCAGAGACAACCTGAT
TGGGTCATCTACCATGAGCTCGTCATGACTACTAAGGAG
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