CB250347

Overview
NameCB250347
Unique NameCB250347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length350
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10666 contig Csv1_Contig10666:131..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1DB_DANRE (Casein kinase I isoform delta-B OS=Danio rerio GN=csnk1db PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 50/113 (44.25%), Postives = 74/113 (65.49%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G +GDY VMVM++LGPSL D++N  S   S++ V  +A + IS +E +HSK ++H DVKP+NFL+G         ++ +D GLA K+RD+ T  H+ Y +  ++  GT RYAS
Sbjct:   72 GAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGL--GKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNL-TGTARYAS 181          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1DA_DANRE (Casein kinase I isoform delta-A OS=Danio rerio GN=csnk1da PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 50/113 (44.25%), Postives = 74/113 (65.49%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G +GDY VMVM++LGPSL D++N  S   S++ V  +A + IS +E +HSK ++H DVKP+NFL+G         ++ +D GLA K+RD+ T  H+ Y +  ++  GT RYAS
Sbjct:   72 GAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGL--GKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNL-TGTARYAS 181          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC12_YEAST (Casein kinase I homolog 2 OS=Saccharomyces cerevisiae GN=YCK2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 41/116 (35.34%), Postives = 77/116 (66.38%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G++G + ++V+D+LGPSL D+++      S++ V  +A++ I+++E +H+   ++ D+KP+NFL+G PG PD  K+  +D G+A ++RD  T  H+ Y ++  +  GT RY S
Sbjct:  136 YYFGQEGLHNILVIDLLGPSLEDLFDWCGRRFSVKTVVQVAVQMITLIEDLHAHDLIYRDIKPDNFLIGRPGQPDANKVHLIDFGMAKQYRDPKTKQHIPYREKKSL-SGTARYMS 250          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1D_PONAB (Casein kinase I isoform delta OS=Pongo abelii GN=CSNK1D PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 49/113 (43.36%), Postives = 74/113 (65.49%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G +GDY VMVM++LGPSL D++N  S   S++ +  +A + IS +E +HSK ++H DVKP+NFL+G         ++ +D GLA K+RD+ T  H+ Y +  ++  GT RYAS
Sbjct:   72 GAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTILLLADQMISRIEYIHSKNFIHRDVKPDNFLMGL--GKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNL-TGTARYAS 181          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1B_BOVIN (Casein kinase I isoform beta OS=Bos taurus GN=CSNK1B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEY 304
            G++ DY V+VMD+LGPSL D++N  S   S++ V  +A + IS +E +HS+  +H D+KP+NFL+G    P  KKLF VD GLA K+RD+ TG H+ +
Sbjct:   80 GQETDYNVLVMDLLGPSLEDLFNFCSRRFSMKTVLMLADQMISRIEYVHSRNLIHRDIKPDNFLMGT--GPQWKKLFLVDFGLAKKYRDNRTGQHIPH 175          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1AL_HUMAN (Casein kinase I isoform alpha-like OS=Homo sapiens GN=CSNK1A1L PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.608e-19
Identity = 50/116 (43.10%), Postives = 77/116 (66.38%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            H+ G++ D  V+VMD+LGPSL D++N  S   +++ V  +A + IS +E +H+K ++H D+KP+NFL+G     +  KLF +D GLA K+RD+ T  H+ Y +   +  GTVRYAS
Sbjct:   77 HWYGQEKDNNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFLHRDIKPDNFLMGTGRHCN--KLFLIDFGLAKKYRDNRTRQHIPYREDKHLI-GTVRYAS 189          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1A_XENLA (Casein kinase I isoform alpha OS=Xenopus laevis GN=csnk1a1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.407e-19
Identity = 49/113 (43.36%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G++ DY V+VMD+LGPSL D++N  S   +++ V  +A + IS +E +H+K ++H D+KP+NFL+G     +  KLF +D GLA K+RD+ T  H+ Y +  ++  GT RYAS
Sbjct:   80 GQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCN--KLFLIDFGLAKKYRDNRTRQHIPYREDKNL-TGTARYAS 189          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1A_SHEEP (Casein kinase I isoform alpha OS=Ovis aries GN=CSNK1A1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.407e-19
Identity = 49/113 (43.36%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G++ DY V+VMD+LGPSL D++N  S   +++ V  +A + IS +E +H+K ++H D+KP+NFL+G     +  KLF +D GLA K+RD+ T  H+ Y +  ++  GT RYAS
Sbjct:   80 GQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCN--KLFLIDFGLAKKYRDNRTRQHIPYREDKNL-TGTARYAS 189          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1A_RABIT (Casein kinase I isoform alpha OS=Oryctolagus cuniculus GN=CSNK1A1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.407e-19
Identity = 49/113 (43.36%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G++ DY V+VMD+LGPSL D++N  S   +++ V  +A + IS +E +H+K ++H D+KP+NFL+G     +  KLF +D GLA K+RD+ T  H+ Y +  ++  GT RYAS
Sbjct:   80 GQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCN--KLFLIDFGLAKKYRDNRTRQHIPYREDKNL-TGTARYAS 189          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1A_MOUSE (Casein kinase I isoform alpha OS=Mus musculus GN=Csnk1a1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.407e-19
Identity = 49/113 (43.36%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G++ DY V+VMD+LGPSL D++N  S   +++ V  +A + IS +E +H+K ++H D+KP+NFL+G     +  KLF +D GLA K+RD+ T  H+ Y +  ++  GT RYAS
Sbjct:   80 GQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCN--KLFLIDFGLAKKYRDNRTRQHIPYREDKNL-TGTARYAS 189          
The following BLAST results are available for this feature:
BLAST of CB250347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
KC1DB_DANRE1.171e-1944.25Casein kinase I isoform delta-B OS=Danio rerio GN=... [more]
KC1DA_DANRE1.171e-1944.25Casein kinase I isoform delta-A OS=Danio rerio GN=... [more]
KC12_YEAST1.171e-1935.34Casein kinase I homolog 2 OS=Saccharomyces cerevis... [more]
KC1D_PONAB1.529e-1943.36Casein kinase I isoform delta OS=Pongo abelii GN=C... [more]
KC1B_BOVIN1.529e-1947.96Casein kinase I isoform beta OS=Bos taurus GN=CSNK... [more]
KC1AL_HUMAN2.608e-1943.10Casein kinase I isoform alpha-like OS=Homo sapiens... [more]
KC1A_XENLA3.407e-1943.36Casein kinase I isoform alpha OS=Xenopus laevis GN... [more]
KC1A_SHEEP3.407e-1943.36Casein kinase I isoform alpha OS=Ovis aries GN=CSN... [more]
KC1A_RABIT3.407e-1943.36Casein kinase I isoform alpha OS=Oryctolagus cunic... [more]
KC1A_MOUSE3.407e-1943.36Casein kinase I isoform alpha OS=Mus musculus GN=C... [more]

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Properties
Property NameValue
Genbank descriptionEST0137 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ202 similar to casein kinase (acc# NP_180147), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250347 ID=CB250347; Name=CB250347; organism=Citrus sinensis; type=EST; length=350bp
ACACTTCAAGGGCCGGCAAGGTGACTATTATGTGATGGTAATGGATATGC
TGGGACCAAGCTTGTGGGATGTATGGAATAATAACTCGCATACAATGTCC
ATTGAAATGGTTGCCTGCATTGCCATTGAAGCAATATCGATATTGGAGAA
GATGCACTCCAAAGGGTATGTGCATGGAGATGTGAAGCCTGAAAATTTTC
TGCTTGGTCCTCCTGGAACACCTGATGAGAAGAAATTATTCCCTGTTGAC
CTTGGACTAGCTACTAAATGGCGAGACAGCACAACTGGCATGCATGTTGA
ATATGACCAAAGGCCTGATGTTTTCAGGGGAACAGTCCGTTATGCTAGTG
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