CB250347

Overview
NameCB250347
Unique NameCB250347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length350
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10666 contig Csv1_Contig10666:131..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: YMX8_CAEEL (Putative serine/threonine-protein kinase K06H7.1 OS=Caenorhabditis elegans GN=K06H7.8 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.935e-11
Identity = 36/114 (31.58%), Postives = 60/114 (52.63%), Query Frame = 2 
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKW-RDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G++  Y  MVM +LG SL  +   +   +++     I I  +  ++++H  GY+H D+KP N  +G  G+ DE+    +D GLA ++  D   G+ +   +    FRGT RY S
Sbjct:   85 GKKERYSYMVMTLLGESLDSLLKKHGPFLNVSTQVRIGICILFGIKQVHDIGYLHRDLKPANVAMGCKGSADERYFLVLDFGLARQYIADEDDGLKMRRPREKTYFRGTARYCS 198
The following BLAST results are available for this feature:
BLAST of CB250347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
YMX8_CAEEL9.935e-1131.58Putative serine/threonine-protein kinase K06H7.1 O... [more]

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Properties
Property NameValue
Genbank descriptionEST0137 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ202 similar to casein kinase (acc# NP_180147), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250347 ID=CB250347; Name=CB250347; organism=Citrus sinensis; type=EST; length=350bp
ACACTTCAAGGGCCGGCAAGGTGACTATTATGTGATGGTAATGGATATGC
TGGGACCAAGCTTGTGGGATGTATGGAATAATAACTCGCATACAATGTCC
ATTGAAATGGTTGCCTGCATTGCCATTGAAGCAATATCGATATTGGAGAA
GATGCACTCCAAAGGGTATGTGCATGGAGATGTGAAGCCTGAAAATTTTC
TGCTTGGTCCTCCTGGAACACCTGATGAGAAGAAATTATTCCCTGTTGAC
CTTGGACTAGCTACTAAATGGCGAGACAGCACAACTGGCATGCATGTTGA
ATATGACCAAAGGCCTGATGTTTTCAGGGGAACAGTCCGTTATGCTAGTG
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