CB250353

Overview
NameCB250353
Unique NameCB250353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length367
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB250353_ssr326 microsatellite CB250353_ssr326:326..337. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11819 contig Csv1_Contig11819:228..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250353 vs. ExPASy Swiss-Prot
Match: C71AC_ARATH (Cytochrome P450 71A12 OS=Arabidopsis thaliana GN=CYP71A12 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.007e-15
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 3
Query:   15 EEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKL---PNGREEDCVNMNMEEATGVSLTLSKKTPLILVP 284
            EEF PER +D  +D  G+D  ++PFGSGRRICPGINL L + E+ +ANL+  FDW+    PNG + D     + EA G  L + +K PLI  P
Sbjct:  408 EEFKPERHLDSTLDYHGKDLNFIPFGSGRRICPGINLALGLVEVTVANLVGRFDWRAEAGPNGDQPD-----LTEAFG--LDVCRKFPLIAFP 493          
BLAST of CB250353 vs. ExPASy Swiss-Prot
Match: C98A2_SOYBN (Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 3
Query:    3 WESPEEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPNGREEDCVNM 218
            W+ P EF PERF+++ VD+KG DF  LPFGSGRR+CPG  LG+ ++   L +LL+ F W  P G + + ++M
Sbjct:  404 WKDPLEFRPERFLEEDVDMKGHDFRLLPFGSGRRVCPGAQLGINLAASMLGHLLHHFCWTPPEGMKPEEIDM 475          
BLAST of CB250353 vs. ExPASy Swiss-Prot
Match: C80B2_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS=Eschscholzia californica GN=CYP80B2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 3
Query:    3 WESPEEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPNGREEDCVNMNMEEATGVSLTLSKKTPLILVP 284
            W  P  F PERF++  VD +G DF  +PFG+GRRICPG+ +      L +A  +   DW LPNG   D  ++ +EE  G  LTL K+ PL +VP
Sbjct:  395 WIDPLTFSPERFLNSSVDFRGNDFSLIPFGAGRRICPGLPIANQFIALLVATFVQNLDWCLPNGMSVD--HLIVEEKFG--LTLQKEPPLFIVP 484          
BLAST of CB250353 vs. ExPASy Swiss-Prot
Match: C71AE_ARATH (Cytochrome P450 71A14 OS=Arabidopsis thaliana GN=CYP71A14 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.717e-15
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   15 EEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPNGREEDCVNMNMEEATGVSLTLSKKTPLILVP 284
            EEF PER +D  VD +G +FE++PFGSGRRICPGI   + + E+ LANL+  F+W++      D    ++ E+TG  L + +K PLI+ P
Sbjct:  409 EEFRPERHLDSLVDFRGTNFEFIPFGSGRRICPGIGFAMALVEVTLANLVNRFNWRMEVQHSGD--EYDLAESTG--LDVCRKFPLIVFP 494          
BLAST of CB250353 vs. ExPASy Swiss-Prot
Match: C98A3_ARATH (Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15
Identity = 33/73 (45.21%), Postives = 52/73 (71.23%), Query Frame = 3
Query:    3 WESPEEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPNGREEDCVNMN 221
            W++P EF PERF+++ VD+KG DF  LPFG+GRR+CPG  LG+ +    +++LL+ F W  P G + + ++M+
Sbjct:  403 WKNPFEFRPERFLEEDVDMKGHDFRLLPFGAGRRVCPGAQLGINLVTSMMSHLLHHFVWTPPQGTKPEEIDMS 475          
BLAST of CB250353 vs. ExPASy Swiss-Prot
Match: C76A2_SOLME (Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 3
Query:    3 WESPEEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPNGREEDCVNMNMEEATGVSLTLSKKTPLILVP 284
            W+ P  F PERF+   +DVKGQ +  +PFG+GRR+C G+ LG  M   AL +LL  F+W+LP+G     +NM+      + +T  K+  L ++P
Sbjct:  413 WDDPMSFKPERFLGSKIDVKGQHYGLIPFGAGRRMCVGLPLGHRMMHFALGSLLREFEWELPDGVSPKSINMD----GSMGVTARKRDSLKVIP 502          
BLAST of CB250353 vs. ExPASy Swiss-Prot
Match: C78AB_ORYSJ (Cytochrome P450 78A11 OS=Oryza sativa subsp. japonica GN=CYP78A11 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.525e-15
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 3
Query:    3 WESPEEFIPERFIDKP----VDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPNGREEDCVNMNMEEATGVSLTLSKKTPL 272
            W  PE F PERFI       VDV+G D    PFG+GRR+CPG NLGL    L +A L++ FDW LP+G       ++++E   + L+L  KTPL
Sbjct:  456 WADPEAFAPERFIPSEGGADVDVRGGDLRLAPFGAGRRVCPGKNLGLATVTLWVARLVHAFDWFLPDGSPP----VSLDEV--LKLSLEMKTPL 543          
BLAST of CB250353 vs. ExPASy Swiss-Prot
Match: C71AM_ARATH (Cytochrome P450 71A22 OS=Arabidopsis thaliana GN=CYP71A22 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.525e-15
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 3
Query:   15 EEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPNGREEDCVNMNMEEATGV 242
            E+F PER ++  VD +G +FE +PFG+GRRICP I+  +I+ E+ LANL++ +DW+LP    ED    N+ E+TG+
Sbjct:  401 EKFRPERHLNSSVDFRGHNFELIPFGAGRRICPAISFAVILIEVTLANLVHRYDWRLPEEYIED--QTNVAESTGM 474          
BLAST of CB250353 vs. ExPASy Swiss-Prot
Match: C78A1_MAIZE (Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.522e-15
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 3
Query:    3 WESPEEFIPERFIDKP----VDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPNGREEDCVNMNMEEATGVSLTLSKKTPLILVPV 287
            W  P+ F PERF+       VDV+G D    PFG+GRR+CPG NLGL    L +A L++ F W LP+G    C++  ++      L+L  KTPL+   +
Sbjct:  451 WADPDAFAPERFLPSEGGADVDVRGVDLRLAPFGAGRRVCPGKNLGLTTVGLWVARLVHAFQWALPDGAAAVCLDEVLK------LSLEMKTPLVAAAI 543          
BLAST of CB250353 vs. ExPASy Swiss-Prot
Match: C71AN_ARATH (Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=CYP71A23 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.522e-15
Identity = 34/89 (38.20%), Postives = 57/89 (64.04%), Query Frame = 3
Query:   18 EFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPNGREEDCVNMNMEEATGVSLTLSKKTPLILVP 284
            EF PER ++ P D +GQDFE +PFG+GRR+CPGI+  ++++E+ LANL++ FDW+         ++   + A  +   + +  PL ++P
Sbjct:  399 EFRPERHLESPSDFRGQDFELIPFGAGRRMCPGISFAVVLNEVVLANLVHGFDWQ--------SIDDETDVAESIGSVIRRMHPLYVIP 479          
The following BLAST results are available for this feature:
BLAST of CB250353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
C71AC_ARATH1.007e-1548.39Cytochrome P450 71A12 OS=Arabidopsis thaliana GN=C... [more]
C98A2_SOYBN1.315e-1548.61Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=... [more]
C80B2_ESCCA1.315e-1544.68(S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS... [more]
C71AE_ARATH1.717e-1545.56Cytochrome P450 71A14 OS=Arabidopsis thaliana GN=C... [more]
C98A3_ARATH4.996e-1545.21Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CY... [more]
C76A2_SOLME4.996e-1540.43Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76... [more]
C78AB_ORYSJ6.525e-1545.74Cytochrome P450 78A11 OS=Oryza sativa subsp. japon... [more]
C71AM_ARATH6.525e-1547.37Cytochrome P450 71A22 OS=Arabidopsis thaliana GN=C... [more]
C78A1_MAIZE8.522e-1540.40Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 S... [more]
C71AN_ARATH8.522e-1538.20Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionEST0147 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ214 similar to cytochrome P450 (acc # AAL24049), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250353 ID=CB250353; Name=CB250353; organism=Citrus sinensis; type=EST; length=367bp
ACTGGGAGAGTCCTGAAGAATTCATCCCAGAAAGGTTTATTGATAAGCCG
GTTGATGTTAAAGGACAAGATTTCGAATATTTACCATTTGGATCCGGCCG
AAGAATTTGTCCTGGGATTAATTTGGGATTAATAATGTCGGAGCTTGCGC
TTGCAAATCTCTTGTATTGTTTTGATTGGAAATTGCCGAATGGAAGGGAG
GAGGATTGTGTTAACATGAACATGGAGGAGGCAACTGGTGTGTCTCTCAC
TCTCTCTAAAAAGACGCCTCTTATCCTTGTGCCAGTCAATTACCTCCAGT
AGCATAGCCATCAGAAAAATGAAAGACAACAACAACATTGCTCTGTTGTA
ACTTCCTCAACTTCCTG
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