CB250355

Overview
NameCB250355
Unique NameCB250355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250355 vs. ExPASy Swiss-Prot
Match: CHI1_RHIOL (Chitinase 1 OS=Rhizopus oligosporus GN=CHI1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.465e-12
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 3
Query:    3 PDAWLGGALGTGLFDYVWVQFYNNPPCQYSGNADNLKNSWNQW--TSNLSGSGQVFLGLPASPEAAGSGYIPPDVLTSQVLPAIKSSPKYGGVMLW 284
            PDA LG  L +  FDYV VQFYNN  C  +G++ N  ++W+ W  T++ + + ++   +P SP AAGSGY+P   L + V         YGGV +W
Sbjct:  199 PDAILGSVLNSASFDYVNVQFYNNY-CSATGSSFNF-DTWDNWAKTTSPNKNVKIMFTIPGSPTAAGSGYVPMSTLQTIVPSLASEYSSYGGVSVW 292          
BLAST of CB250355 vs. ExPASy Swiss-Prot
Match: CHI2_RHIOL (Chitinase 2 OS=Rhizopus oligosporus GN=CHI2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 3
Query:    3 PDAWLGGALGTGLFDYVWVQFYNNPPCQYSGNADNLKNSWNQW--TSNLSGSGQVFLGLPASPEAAGSGYIPPDVLTSQVLPAIKSSPKYGGVMLW 284
            PDA LG  L +  FDYV VQFYNN  C  +G++ N  ++W+ W  T++ + + ++   +P S  AAGSGY+P   L + V         YGGV +W
Sbjct:  199 PDAILGSVLNSASFDYVNVQFYNNY-CSATGSSFNF-DTWDNWAKTTSPNKNVKIMFTVPGSSTAAGSGYVPMSTLQTIVPSLASKYSSYGGVSVW 292          
BLAST of CB250355 vs. ExPASy Swiss-Prot
Match: XIP1_ORYSJ (Xylanase inhibitor protein 1 OS=Oryza sativa subsp. japonica GN=RIXI PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.762e-11
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 3
Query:    3 PDAWLGGALGTGLFDYVWVQFYNNPPCQYS-GNADNLKNSWNQWTSNLSGSGQVFLGLPASPEAAGSGYIPPDVLTSQVLPAIKSSPKYGGVMLWSRQYDK--SYSSAIK 323
            PD  +  AL T LF+ + V+FY++  C Y+      +   WN+WT+   GS  V+LGL A+     +  +    L   +LP ++ +  YGG+MLW R YDK   Y   +K
Sbjct:  193 PDPRMKKALDTKLFERIHVRFYDDATCSYNHAGLAGVMAQWNKWTARYPGS-HVYLGLAAANVPGKNDNVFIKQLYYDLLPNVQKAKNYGGIMLWDRFYDKQTGYGKTVK 301          
The following BLAST results are available for this feature:
BLAST of CB250355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CHI1_RHIOL1.465e-1240.63Chitinase 1 OS=Rhizopus oligosporus GN=CHI1 PE=1 S... [more]
CHI2_RHIOL1.619e-1139.58Chitinase 2 OS=Rhizopus oligosporus GN=CHI2 PE=1 S... [more]
XIP1_ORYSJ2.762e-1134.55Xylanase inhibitor protein 1 OS=Oryza sativa subsp... [more]

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Properties
Property NameValue
Genbank descriptionEST0149 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ218 similar to acidic endochitinase (acc# P29060), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250355 ID=CB250355; Name=CB250355; organism=Citrus sinensis; type=EST; length=475bp
ACCCTGATGCATGGCTTGGCGGTGCACTAGGAACTGGCTTATTTGATTAC
GTTTGGGTCCAATTCTATAACAATCCTCCTTGTCAGTATTCCGGCAATGC
GGATAATCTCAAGAACAGTTGGAATCAATGGACATCAAATCTATCTGGTT
CTGGCCAAGTATTTTTGGGATTGCCAGCGTCTCCTGAAGCAGCCGGGAGC
GGCTATATTCCCCCAGATGTGCTTACATCTCAGGTTCTGCCGGCTATTAA
GAGTTCCCCAAAATACGGAGGAGTCATGCTCTGGTCTAGGCAGTATGACA
AGAGTTATAGCTCAGCTATTAAACCCAGTGTTTGAACCATACACCATATT
ACCTGATAATATTTTCTTCACCTTAAATAATTAATAAATCTACATGAAAT
AAGAATATTGTATAATCATACGCAATAAATTTAGAGCAAGAGCTTTGGCA
TGTAGTAAAAAAAAAAAAAAAAAAA
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