CB250370

Overview
NameCB250370
Unique NameCB250370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.070e-41
Identity = 70/117 (59.83%), Postives = 96/117 (82.05%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            +ALFN+G SCG CY++ C++  +P+WCL G ++ +T TN CPPN ALS+++GGWCNPP  HFDMAEPA+LQI  Y+AGIVP+ ++R+PC K+GG+RFT+ G +YF LVLI+NV G+G
Sbjct:   72 SALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSG 188          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 5.237e-41
Identity = 72/117 (61.54%), Postives = 91/117 (77.78%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            T LFN+G SCG CY + C+   D ++C+ G S+ +TATN CPPN AL ND GGWCNPP QHFDMAEPA+L+I  Y  GIVP+ ++R+PCAK+GG+RFT+NG  YF LVL++NVGG G
Sbjct:   74 TVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVG 190          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.524e-40
Identity = 71/116 (61.21%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            TALF+ GLSCG+C+E+ C NDP+WC+ G SI+VTATNFCPP        GG C+PP  HFD+++P + +IA Y++GI+P+ +RR+ C + GGIRFT+NGHSYFNLVL+TNVGGAGD
Sbjct:   78 TALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGD 185          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.599e-40
Identity = 69/117 (58.97%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCE-NDPKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            +ALFN+G  CG+CY + C+ +  KWC PG  SI +TATN CPPN AL +++GGWCNPP QHFDM++PA+  IA Y+AGIVP++++R+PC + GGIRF ++GH YF LV +TNVGG+G
Sbjct:   68 SALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSG 184          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.599e-40
Identity = 68/115 (59.13%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            TALFN G +CG+CY++ C NDP+WCLPGS+ +TATNFCPP+   S   G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G+ YF ++L  NVGGAGD
Sbjct:   88 TALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPDY--SKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGD 200          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.434e-40
Identity = 69/116 (59.48%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCE-NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            +ALFN+G +CG CY++ C+ ++ KWC  G S+ +TATN CPP+ +  +++GGWCNPP QHFDMA+PA+ QI  YR GIVP++F+R+ C +KGG+RFT+NG+SYF LVLITNVGG G
Sbjct:   64 SALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPG 179          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.563e-40
Identity = 68/115 (59.13%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            TALFN+G +CG+CYE+ C  DP+WCLPGS+ +TATNFCP N + + D   WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF +VLI NVGGAGD
Sbjct:   98 TALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGD 210          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.563e-40
Identity = 68/115 (59.13%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            TALFN+G +CG+CYE+ C  DP+WCLPGS+ +TATNFCP N + + D   WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF +VLI NVGGAGD
Sbjct:   92 TALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGD 204          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.685e-39
Identity = 67/115 (58.26%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            TALFN G +CG+CY++ C +DP+WCLPG+I +TATNFCPP+   S   G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G+ YF ++L  NVGGAGD
Sbjct:   95 TALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPDY--SKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGD 207          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.092e-38
Identity = 68/116 (58.62%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPK-WCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            +ALFN+G  CG+CY + C+     WC PG SI +TATN CPPN A  +D GGWCNPP +HFDM++PA+  IA Y+AGIVP++F+R+PC K GGIRFT++G  YF LV + NVGG+G
Sbjct:   63 SALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSG 178          
The following BLAST results are available for this feature:
BLAST of CB250370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP15_ORYSJ3.070e-4159.83Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ5.237e-4161.54Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ARATH1.524e-4061.21Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA3_ORYSJ2.599e-4058.97Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP23_ARATH2.599e-4059.13Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP12_ORYSJ4.434e-4059.48Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH7.563e-4059.13Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH7.563e-4059.13Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP25_ARATH1.685e-3958.26Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP33_ORYSJ1.092e-3858.62Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionEST0168 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ243 similar to expansin (acc# AAC33530), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250370 ID=CB250370; Name=CB250370; organism=Citrus sinensis; type=EST; length=346bp
ACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCATGCTATGAAATGAA
ATGTGAAAATGACCCCAAGTGGTGCCTCCCCGGCTCCATCATTGTCACCG
CCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACAACGGCGGT
TGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCCGCTTTCTT
GCAAATTGCCCAATACCGCGCCGGTATCGTCCCAATTTCCTTCAGAAGGA
TCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATGGACACTCA
TACTTCAACCTGGTTTTGATCACAAATGTCGGAGGAGCAGGAGATG
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