CB250383

Overview
NameCB250383
Unique NameCB250383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9615 contig Csv1_Contig9615:181..425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: FAD5_MORAP (Delta(5) fatty acid desaturase OS=Mortierella alpina GN=DES1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.318e-12
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 3
Query:    9 EVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVP 233
            E++ HN + D +L I G+VYDVTKFL  HPGG + LL   G+D T  FE      +A A+M ++YVG + S+ +P
Sbjct:   13 ELAAHNTKGDLFLAIRGRVYDVTKFLSRHPGGVDTLLLGAGRDVTPVFEMYHAFGAADAIMKKYYVGTLVSNELP 87          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.163e-12
Identity = 27/71 (38.03%), Postives = 47/71 (66.20%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  H+     W+I+ G +YD T+FL DHPGG + +L   G D T++F+ + HS  AK ++++F +G++
Sbjct:  536 MSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGTDSILINAGTDCTEEFDAI-HSDKAKKLLEDFRIGEL 605          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.163e-12
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  H+ +   W+++ G VYD T FL DHPGG + +L   G D T++F+ + HS  AKA++D + +G++
Sbjct:  546 MSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 615          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_SOLLC (Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.743e-12
Identity = 27/71 (38.03%), Postives = 47/71 (66.20%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  HN     W+I+ G +YD ++FL DHPGG + +L   G D T++F+ + HS  AK ++++F +G++
Sbjct:  541 MSEVRKHNSSDSAWIIVHGHIYDASRFLKDHPGGVDSILINAGTDCTEEFDAI-HSDKAKKLLEDFRIGEL 610          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA2_PHAVU (Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.743e-12
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  H+     W+I+ G VYD T+FL DHPGG + +L   G D T++F+ + HS  AK M++++ +G++
Sbjct:  518 VSEVKKHSSPDSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 587          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NB5R4_XENTR (Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN=cyb5r4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.150e-11
Identity = 27/67 (40.30%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    9 EVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVG 209
            E++ HN ++DCW+ I G VY++T +++ HPGG+E L+ A G+D TD F+ V    + ++M+ E  +G
Sbjct:   61 ELAQHNKKEDCWICIRGMVYNITPYMEYHPGGEEELMKAAGRDGTDLFDQVHRWVNYESMLKECLIG 127          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA3_MAIZE (Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.502e-11
Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  H  +   W+++ G VYD T FL DHPGG + +L   G D T++F+ + HS  AK ++D + +GD+
Sbjct:  525 MSEVRKHASQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKELLDTYRIGDL 594          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_FUSOX (Nitrate reductase [NADPH] OS=Fusarium oxysporum GN=NIA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.962e-11
Identity = 27/75 (36.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 227
            + E+  H+  ++ W +++G+VYD T +L  HPGG   +  A G+DAT++F  + HS +AKAM+  +++G +D  +
Sbjct:  551 IEELKAHSGEEEPWFVVKGEVYDGTPYLSGHPGGAASIFGAAGQDATEEFMAI-HSENAKAMLPTYHIGTLDEES 624          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_EMENI (Nitrate reductase [NADPH] OS=Emericella nidulans GN=niaD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.962e-11
Identity = 29/81 (35.80%), Postives = 53/81 (65.43%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVPTKTK 245
            L E   ++  +  W ++ G+VYD T FL+ HPGG + ++SA G DA+++F ++ HS +AK MM ++++G +D +++    K
Sbjct:  517 LEEFKKNSSDERPWFVVNGEVYDGTAFLEGHPGGAQSIISAAGTDASEEFLEI-HSETAKKMMPDYHIGTLDKASLEALRK 596          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.962e-11
Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 3
Query:    9 EVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAK--AMMDEFYVGDIDSSTVP 233
            EVS HN + D W+I++GKVY++TK++  HPGG+++LL + G+DAT+ FE   H  + K  +++ ++ +G I S   P
Sbjct:   19 EVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESY-HPMTDKHYSLIKQYEIGYISSYEHP 94          
The following BLAST results are available for this feature:
BLAST of CB250383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
FAD5_MORAP2.318e-1245.33Delta(5) fatty acid desaturase OS=Mortierella alpi... [more]
NIA2_TOBAC5.163e-1238.03Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NIA1_ORYSJ5.163e-1239.44Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]
NIA_SOLLC6.743e-1238.03Nitrate reductase [NADH] OS=Solanum lycopersicum G... [more]
NIA2_PHAVU6.743e-1239.44Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris G... [more]
NB5R4_XENTR1.150e-1140.30Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN... [more]
NIA3_MAIZE1.502e-1139.44Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1[more]
NIA_FUSOX1.962e-1136.00Nitrate reductase [NADPH] OS=Fusarium oxysporum GN... [more]
NIA_EMENI1.962e-1135.80Nitrate reductase [NADPH] OS=Emericella nidulans G... [more]
FAD5B_DICDI1.962e-1141.56Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]

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Properties
Property NameValue
Genbank descriptionEST0185 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ268 similar to cytochrome b5 (acc# P49098), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250383 ID=CB250383; Name=CB250383; organism=Citrus sinensis; type=EST; length=245bp
CTTTGGCTGAGGTCTCTGGGCACAACGACCGCAAGGACTGTTGGCTTATC
ATTGAGGGCAAGGTATATGATGTGACAAAATTCTTGGATGACCATCCTGG
TGGAGACGAGGTATTGTTGTCTGCCACAGGAAAGGATGCGACTGACGACT
TTGAGGATGTTGGTCACAGTAGCAGTGCAAAAGCGATGATGGATGAATTC
TATGTGGGTGACATTGATTCATCAACCGTTCCCACCAAGACCAAG
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