CB290197

Overview
NameCB290197
Unique NameCB290197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SHIB3 (Ribosomal RNA large subunit methyltransferase E OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SALTY (Ribosomal RNA large subunit methyltransferase E OS=Salmonella typhimurium GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SALSV (Ribosomal RNA large subunit methyltransferase E OS=Salmonella schwarzengrund (strain CVM19633) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SALPC (Ribosomal RNA large subunit methyltransferase E OS=Salmonella paratyphi C (strain RKS4594) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SALPB (Ribosomal RNA large subunit methyltransferase E OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SALNS (Ribosomal RNA large subunit methyltransferase E OS=Salmonella newport (strain SL254) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SALHS (Ribosomal RNA large subunit methyltransferase E OS=Salmonella heidelberg (strain SL476) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SALG2 (Ribosomal RNA large subunit methyltransferase E OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SALEP (Ribosomal RNA large subunit methyltransferase E OS=Salmonella enteritidis PT4 (strain P125109) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SALDC (Ribosomal RNA large subunit methyltransferase E OS=Salmonella dublin (strain CT_02021853) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
The following BLAST results are available for this feature:
BLAST of CB290197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 404
Match NameE-valueIdentityDescription
RLME_SHIB33.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_SALTY3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_SALSV3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_SALPC3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_SALPB3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_SALNS3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_SALHS3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_SALG23.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_SALEP3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_SALDC3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290197 ID=CB290197; Name=CB290197; organism=Citrus sinensis; type=EST; length=797bp
GTCCTTAGCTCCTTCTTACGCTCATCGCACGCCGTGCTCGACCTCTGCGC
CGCTCCAGGTGGGTGGATGCAGGTGGCAGTGCAGCGGGTCCCGGTAGGGA
GCCTCGTTCTGGGTCTTGACTTGGTCCCGATCGCCCCCATTCGAGGAGCC
GTATCGCTTGAGCAAGATATAACGAAGCCCGAGTGTAGGGCTAGAGTGAA
GAAGGTGATGGAGGAGCATGGGGTTAGGGCTTTTGACTTGGTTTTGCATG
ATGGGTCGCCTAATGTTGGTGGTGCTTGGGCTCAGGAGGCCATGAGTCAG
AACGCTTTGGTCATTGATTCTGTAAAGCTGGCTACGCAGTTCTTGGCTCC
TAAAGGAACCTTTGTTACTAAAGTTTTCAGGTCACAGGATTATAGTTCTG
TCCTCTACTGTCTCAAGCAGTTATTTGAAAAGGTTGAGGTGGATAAACCT
GCTGCTAGTCGTTCCGCATCTGCTGAGATATATCTTTTGGGTATAAAATA
CAAGGCTCCTGCAAAGATCGATCCACGTCTTCTTGATGTGAAGTATCTGT
TTCAGGGATCTGTTGAACCGCGTAAGGTGGTGGATGTACTCAGAGGAACA
AAGCAAAAGAGACATCGTGATGGTTATGAAGATGGAGACACGACTTTGAG
GAAAGTTTCTTTGGCTACTGATTTCATTTGGTCCAATAATCCTCTTGAGA
TTCTTGGTTCAGTTACTTCCATAACATTTGGGGATCCGGCTTGTTCAGCA
ATCAAGGATCACGAATTGACAACAGAAGAGGTTAAAGCTCTTTGTGA
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