CB290197

Overview
NameCB290197
Unique NameCB290197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ECOL6 (Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O6 GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ECOL5 (Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ECOK1 (Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O1:K1 / APEC GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ECOHS (Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O9:H4 (strain HS) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ECODH (Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli (strain K12 / DH10B) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ECOBW (Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli (strain K12 / BW2952) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ECO8A (Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O8 (strain IAI1) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ECO81 (Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O81 (strain ED1a) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ECO7I (Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
[Close]
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ECO5E (Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rlmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.360e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q  V ++     ++  DL+P+ PI G   L+ D         +K ++E  G     +V+ D +PN+ G  A +      LV  ++++    LAP G+FV KVF+ + +   L  ++ LF KV+V KP +SR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD---ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203
The following BLAST results are available for this feature:
BLAST of CB290197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 404
Match NameE-valueIdentityDescription
RLME_ECOL63.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ECOL53.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ECOK13.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ECOHS3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ECODH3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ECOBW3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ECO8A3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ECO813.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ECO7I3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ECO5E3.360e-1734.21Ribosomal RNA large subunit methyltransferase E OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01aa04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290197 ID=CB290197; Name=CB290197; organism=Citrus sinensis; type=EST; length=797bp
GTCCTTAGCTCCTTCTTACGCTCATCGCACGCCGTGCTCGACCTCTGCGC
CGCTCCAGGTGGGTGGATGCAGGTGGCAGTGCAGCGGGTCCCGGTAGGGA
GCCTCGTTCTGGGTCTTGACTTGGTCCCGATCGCCCCCATTCGAGGAGCC
GTATCGCTTGAGCAAGATATAACGAAGCCCGAGTGTAGGGCTAGAGTGAA
GAAGGTGATGGAGGAGCATGGGGTTAGGGCTTTTGACTTGGTTTTGCATG
ATGGGTCGCCTAATGTTGGTGGTGCTTGGGCTCAGGAGGCCATGAGTCAG
AACGCTTTGGTCATTGATTCTGTAAAGCTGGCTACGCAGTTCTTGGCTCC
TAAAGGAACCTTTGTTACTAAAGTTTTCAGGTCACAGGATTATAGTTCTG
TCCTCTACTGTCTCAAGCAGTTATTTGAAAAGGTTGAGGTGGATAAACCT
GCTGCTAGTCGTTCCGCATCTGCTGAGATATATCTTTTGGGTATAAAATA
CAAGGCTCCTGCAAAGATCGATCCACGTCTTCTTGATGTGAAGTATCTGT
TTCAGGGATCTGTTGAACCGCGTAAGGTGGTGGATGTACTCAGAGGAACA
AAGCAAAAGAGACATCGTGATGGTTATGAAGATGGAGACACGACTTTGAG
GAAAGTTTCTTTGGCTACTGATTTCATTTGGTCCAATAATCCTCTTGAGA
TTCTTGGTTCAGTTACTTCCATAACATTTGGGGATCCGGCTTGTTCAGCA
ATCAAGGATCACGAATTGACAACAGAAGAGGTTAAAGCTCTTTGTGA
back to top