CB290197
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SHEWM (Ribosomal RNA large subunit methyltransferase E OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rlmE PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18 Identity = 53/163 (32.52%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 16 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYK 504 +R V+DL AAPGGW QVAV+ V+ D++P+ PI G L+ D + + + ++ G D+VL D +PN+ G + LV ++ + Q LAP G F KVF+ + + + +++ F+ V+ KP +SR S E+YL+ YK Sbjct: 49 IRPGMTVVDLGAAPGGWSQVAVKLAGDNGKVIACDILPMDPIVGVDFLQGDFREEKV---LDALLTRVGDAKVDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFEEYMKSVREAFKTVKTRKPDSSRPRSREVYLVATGYK 208
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ACISJ (Ribosomal RNA large subunit methyltransferase E OS=Acidovorax sp. (strain JS42) GN=rlmE PE=3 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18 Identity = 54/171 (31.58%), Postives = 91/171 (53.22%), Query Frame = 1 Query: 16 LRSSHAVLDLCAAPGGWMQVAVQRVP-----VGSL---VLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYK 504 ++ H V+DL ++PG W Q +R+ VG L ++ LD++P+ PI G L+ D + E A +++ ++ R D+V+ D +PN+ G + +A+ L+ +V A L P+G V K+F YS ++ K F V+ KP ASR S+E +L+G+ K Sbjct: 50 IKPGHVVVDLGSSPGAWSQYVRRRLSPDGAAVGQLNGVIIALDILPMEPIEGVTFLQGDFREEEVLAGLQEAVQ---ARPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPEGALVVKLFHGSGYSQLVQLFKDTFRVVKPMKPKASRDKSSETFLVGMGLK 217
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPY (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rlmE PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17 Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489 V+DL AAPGGW Q AV ++ V+ DL+P+ PI G L+ D +K ++E G + +V+ D +PN+ G A + LV ++ + LAP G+F+ KVF+ + L ++ LF KV++ KP ASR+ S E+Y++ Sbjct: 55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPS (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pseudotuberculosis GN=rlmE PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17 Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489 V+DL AAPGGW Q AV ++ V+ DL+P+ PI G L+ D +K ++E G + +V+ D +PN+ G A + LV ++ + LAP G+F+ KVF+ + L ++ LF KV++ KP ASR+ S E+Y++ Sbjct: 55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPP (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis (strain Pestoides F) GN=rlmE PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17 Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489 V+DL AAPGGW Q AV ++ V+ DL+P+ PI G L+ D +K ++E G + +V+ D +PN+ G A + LV ++ + LAP G+F+ KVF+ + L ++ LF KV++ KP ASR+ S E+Y++ Sbjct: 55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPN (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rlmE PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17 Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489 V+DL AAPGGW Q AV ++ V+ DL+P+ PI G L+ D +K ++E G + +V+ D +PN+ G A + LV ++ + LAP G+F+ KVF+ + L ++ LF KV++ KP ASR+ S E+Y++ Sbjct: 55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPE (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis GN=rlmE PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17 Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489 V+DL AAPGGW Q AV ++ V+ DL+P+ PI G L+ D +K ++E G + +V+ D +PN+ G A + LV ++ + LAP G+F+ KVF+ + L ++ LF KV++ KP ASR+ S E+Y++ Sbjct: 55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPB (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rlmE PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17 Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489 V+DL AAPGGW Q AV ++ V+ DL+P+ PI G L+ D +K ++E G + +V+ D +PN+ G A + LV ++ + LAP G+F+ KVF+ + L ++ LF KV++ KP ASR+ S E+Y++ Sbjct: 55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPA (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rlmE PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17 Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489 V+DL AAPGGW Q AV ++ V+ DL+P+ PI G L+ D +K ++E G + +V+ D +PN+ G A + LV ++ + LAP G+F+ KVF+ + L ++ LF KV++ KP ASR+ S E+Y++ Sbjct: 55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERP3 (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rlmE PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17 Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489 V+DL AAPGGW Q AV ++ V+ DL+P+ PI G L+ D +K ++E G + +V+ D +PN+ G A + LV ++ + LAP G+F+ KVF+ + L ++ LF KV++ KP ASR+ S E+Y++ Sbjct: 55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203 The following BLAST results are available for this feature:
BLAST of CB290197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 404
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290197 ID=CB290197; Name=CB290197; organism=Citrus sinensis; type=EST; length=797bpback to top |