CB290197

Overview
NameCB290197
Unique NameCB290197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_SHEWM (Ribosomal RNA large subunit methyltransferase E OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rlmE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 53/163 (32.52%), Postives = 85/163 (52.15%), Query Frame = 1
Query:   16 LRSSHAVLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYK 504
            +R    V+DL AAPGGW QVAV+       V+  D++P+ PI G   L+ D  + +    +  ++   G    D+VL D +PN+ G    +      LV  ++ +  Q LAP G F  KVF+ + +   +  +++ F+ V+  KP +SR  S E+YL+   YK
Sbjct:   49 IRPGMTVVDLGAAPGGWSQVAVKLAGDNGKVIACDILPMDPIVGVDFLQGDFREEKV---LDALLTRVGDAKVDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFEEYMKSVREAFKTVKTRKPDSSRPRSREVYLVATGYK 208          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_ACISJ (Ribosomal RNA large subunit methyltransferase E OS=Acidovorax sp. (strain JS42) GN=rlmE PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 54/171 (31.58%), Postives = 91/171 (53.22%), Query Frame = 1
Query:   16 LRSSHAVLDLCAAPGGWMQVAVQRVP-----VGSL---VLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLLGIKYK 504
            ++  H V+DL ++PG W Q   +R+      VG L   ++ LD++P+ PI G   L+ D  + E  A +++ ++    R  D+V+ D +PN+ G  + +A+    L+  +V  A   L P+G  V K+F    YS ++   K  F  V+  KP ASR  S+E +L+G+  K
Sbjct:   50 IKPGHVVVDLGSSPGAWSQYVRRRLSPDGAAVGQLNGVIIALDILPMEPIEGVTFLQGDFREEEVLAGLQEAVQ---ARPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPEGALVVKLFHGSGYSQLVQLFKDTFRVVKPMKPKASRDKSSETFLVGMGLK 217          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPY (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rlmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q AV ++     V+  DL+P+ PI G   L+ D         +K ++E  G +   +V+ D +PN+ G  A +      LV  ++ +    LAP G+F+ KVF+   +   L  ++ LF KV++ KP ASR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPS (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pseudotuberculosis GN=rlmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q AV ++     V+  DL+P+ PI G   L+ D         +K ++E  G +   +V+ D +PN+ G  A +      LV  ++ +    LAP G+F+ KVF+   +   L  ++ LF KV++ KP ASR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPP (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis (strain Pestoides F) GN=rlmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q AV ++     V+  DL+P+ PI G   L+ D         +K ++E  G +   +V+ D +PN+ G  A +      LV  ++ +    LAP G+F+ KVF+   +   L  ++ LF KV++ KP ASR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPN (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rlmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q AV ++     V+  DL+P+ PI G   L+ D         +K ++E  G +   +V+ D +PN+ G  A +      LV  ++ +    LAP G+F+ KVF+   +   L  ++ LF KV++ KP ASR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPE (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis GN=rlmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q AV ++     V+  DL+P+ PI G   L+ D         +K ++E  G +   +V+ D +PN+ G  A +      LV  ++ +    LAP G+F+ KVF+   +   L  ++ LF KV++ KP ASR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPB (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rlmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q AV ++     V+  DL+P+ PI G   L+ D         +K ++E  G +   +V+ D +PN+ G  A +      LV  ++ +    LAP G+F+ KVF+   +   L  ++ LF KV++ KP ASR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERPA (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rlmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q AV ++     V+  DL+P+ PI G   L+ D         +K ++E  G +   +V+ D +PN+ G  A +      LV  ++ +    LAP G+F+ KVF+   +   L  ++ LF KV++ KP ASR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203          
BLAST of CB290197 vs. ExPASy Swiss-Prot
Match: RLME_YERP3 (Ribosomal RNA large subunit methyltransferase E OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rlmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.155e-17
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   34 VLDLCAAPGGWMQVAVQRVPVGSLVLGLDLVPIAPIRGAVSLEQDITKPECRARVKKVMEEHGVRAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSVKLATQFLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYLL 489
            V+DL AAPGGW Q AV ++     V+  DL+P+ PI G   L+ D         +K ++E  G +   +V+ D +PN+ G  A +      LV  ++ +    LAP G+F+ KVF+   +   L  ++ LF KV++ KP ASR+ S E+Y++
Sbjct:   55 VVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVGVDFLQGDFRD---ELVLKALLERVGDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRARSREVYIV 203          
The following BLAST results are available for this feature:
BLAST of CB290197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 404
Match NameE-valueIdentityDescription
RLME_SHEWM8.843e-1832.52Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ACISJ8.843e-1831.58Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_YERPY1.155e-1734.87Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_YERPS1.155e-1734.87Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_YERPP1.155e-1734.87Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_YERPN1.155e-1734.87Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_YERPE1.155e-1734.87Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_YERPB1.155e-1734.87Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_YERPA1.155e-1734.87Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_YERP31.155e-1734.87Ribosomal RNA large subunit methyltransferase E OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290197 ID=CB290197; Name=CB290197; organism=Citrus sinensis; type=EST; length=797bp
GTCCTTAGCTCCTTCTTACGCTCATCGCACGCCGTGCTCGACCTCTGCGC
CGCTCCAGGTGGGTGGATGCAGGTGGCAGTGCAGCGGGTCCCGGTAGGGA
GCCTCGTTCTGGGTCTTGACTTGGTCCCGATCGCCCCCATTCGAGGAGCC
GTATCGCTTGAGCAAGATATAACGAAGCCCGAGTGTAGGGCTAGAGTGAA
GAAGGTGATGGAGGAGCATGGGGTTAGGGCTTTTGACTTGGTTTTGCATG
ATGGGTCGCCTAATGTTGGTGGTGCTTGGGCTCAGGAGGCCATGAGTCAG
AACGCTTTGGTCATTGATTCTGTAAAGCTGGCTACGCAGTTCTTGGCTCC
TAAAGGAACCTTTGTTACTAAAGTTTTCAGGTCACAGGATTATAGTTCTG
TCCTCTACTGTCTCAAGCAGTTATTTGAAAAGGTTGAGGTGGATAAACCT
GCTGCTAGTCGTTCCGCATCTGCTGAGATATATCTTTTGGGTATAAAATA
CAAGGCTCCTGCAAAGATCGATCCACGTCTTCTTGATGTGAAGTATCTGT
TTCAGGGATCTGTTGAACCGCGTAAGGTGGTGGATGTACTCAGAGGAACA
AAGCAAAAGAGACATCGTGATGGTTATGAAGATGGAGACACGACTTTGAG
GAAAGTTTCTTTGGCTACTGATTTCATTTGGTCCAATAATCCTCTTGAGA
TTCTTGGTTCAGTTACTTCCATAACATTTGGGGATCCGGCTTGTTCAGCA
ATCAAGGATCACGAATTGACAACAGAAGAGGTTAAAGCTCTTTGTGA
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