CB290207

Overview
NameCB290207
Unique NameCB290207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:772..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = -2
Query:  316 PVEVSFTVYEDFAHYKFGVYKH-----IPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 540
            PV V+F V + F  YK GVY        P DV   HAV  +G+G  ++G  YW++ N W   WG +GYFK++ G N C I
Sbjct:  275 PVSVAFQVIDGFRQYKSGVYTSDHCGTTPDDV--NHAVLAVGYGV-ENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCAI 351          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = -2
Query:  316 PVEVSFTVYEDFAHYKFGVYKH-----IPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 540
            PV V+F V   F  YK GVY        P DV   HAV  +G+G  ++G  YW++ N W   WG +GYFK++ G N CGI
Sbjct:  276 PVSVAFQVINGFRMYKSGVYTSDHCGTSPMDV--NHAVLAVGYGV-ENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCGI 352          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 49/149 (32.89%), Postives = 71/149 (47.65%), Query Frame = -2
Query:  256 EPAYPTPKCVRKCVKKNQLWRNSKHSSISAYR-INSDPEDIMAEIYKNGPVEVSFTVY-EDFAHYKFGVYKHIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRG----SNECGIEEDVVAGLPSSKNLVKEITS 684
            E  YP      KC   N L +NS+  +I  Y  + S  E  +       PV V+       F HY+ G++    G  M  HAV  +G+G S++G DYWI+ N W   WG DGY +++R     S +CGI  +    +  S N V+  +S
Sbjct:  184 EKDYPYHGTNGKC---NSLLKNSRVVTIDGYEDVPSKDETALKRAVSYQPVSVAIDAGGRAFQHYQSGIFTGKCGTNMD-HAVVAVGYG-SENGVDYWIVRNSWGTRWGEDGYIRMERNVASKSGKCGIAIEASYPVKYSPNPVRGTSS 327          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = -2
Query:  316 DPEDIMAEIYKNGPVEVSFTV-YEDFAHYKFGVYKHIPGDVMG-GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRG-SNECGI 579
            D E +   +   GPV V+    +E F  Y  GVY     D     H V ++G+GT + G DYW++ N W  +WG  GY K+ R  +N+CGI
Sbjct:  240 DEEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHGVLVVGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARNQNNQCGI 330          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = -2
Query:  316 DPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYK----HIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 579
            D E ++  +    PV  +F V +DF  Y+ G+Y     H   D +  HAV  +G+G  + G  YWI+ N W   WG +GYF I+RG N CG+
Sbjct:  235 DEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVN-HAVLAVGYGEKN-GIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL 324          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = -2
Query:  316 SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYK----HIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 582
            +D E ++  +  + PV  +F V  DF  Y+ G+Y     H   D +  HAV  +G+G  + G  YWI+ N W  +WG  GYF I+RG N CG+
Sbjct:  234 NDEEAMVEAVALHNPVSFAFEVTADFMMYRKGIYSSTSCHKTPDKVN-HAVLAVGYG-EEKGIPYWIVKNSWGPNWGMKGYFLIERGKNMCGL 324          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = -2
Query:  316 NGPVEVSFTVYEDFAHYKFGVYKHIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 546
            NGP+ V+  V  D  +YK G+      +    HAV L+G+G  +D   YWIL N W   WG +GYF+++R  N CG+
Sbjct:  249 NGPISVAIDV-SDLINYKAGIADICENNEGLNHAVLLVGYGVKND-VPYWILKNSWGAEWGEEGYFRVQRDKNSCGM 323          
The following BLAST results are available for this feature:
BLAST of CB290207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ALEU_HORVU3.996e-1142.50Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
ORYC_ORYSJ5.219e-1143.75Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP4_BRANA5.219e-1132.89Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CATL_SARPE5.219e-1137.36Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
CATH_HUMAN5.219e-1138.04Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CATH_BOVIN5.219e-1137.63Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATV_GVCP6.816e-1140.26Viral cathepsin OS=Cydia pomonella granulosis viru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290207 ID=CB290207; Name=CB290207; organism=Citrus sinensis; type=EST; length=724bp
AAAGATGCGACATTTTTCAACTAAACGAATAATTCGGGGAGGAGAAACCA
AGTTATTACAACTGGTTCTATTTTTACACCCAACATTAAACTCCATTAAT
ACATTCAATTATGCAAGACGGGAGCTTCCCATTTCATGCCTTGATAGCTT
AGGTTCAACGATACACCCCTATAGCTACACATTTGATATATAAATAACAA
CATGAAGGGATAGCAAAGTCTGCTCTCAAGCTGAAGCATCCTCAAACATA
TCTGCACTTGTAATCTCTTTGACAAGATTTTTGGATGAAGGCAAACCAGC
AACCACATCCTCTTCAATACCACACTCATTTGATCCTCTTTTAATCTTGA
AGTAACCATCCGCACCCCAGCTTCTATTCCACTGATTAGCGAGAATCCAG
TAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAGCATG
ACCCCCCATTACATCGCCTGGGATGTGTTTGTAAACCCCAAATTTGTAGT
GAGCAAAATCCTCATAAACTGTGAAGGAAACTTCAACTGGTCCATTCTTG
TAAATTTCTGCCATTATGTCCTCTGGATCAGAATTGATTCTATATGCACT
AATACTGGAGTGCTTTGAATTCCTCCAAAGCTGGTTTTTCTTGACGCACT
TCCTCACACACTTTGGAGTAGGATATGCCGGCTCACAACCAGGGTGGGAA
CAGCCAGTACTATCAAAGTAGGGA
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