CB290209

Overview
NameCB290209
Unique NameCB290209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4989 contig Csv1_Contig4989:40..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290209 vs. ExPASy Swiss-Prot
Match: BCAT_MONBE (Branched-chain-amino-acid aminotransferase OS=Monosiga brevicollis GN=37018 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 53/182 (29.12%), Postives = 83/182 (45.60%), Query Frame = -2
Query:  284 GIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXXXKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPVIKGTILPGITRKSIIDVAQ-------SQGFQXXXXXXXXXXXLDADEVFCTGTAVVVSPVGSITYLGK--RVSYGEGGFGAVSQQLYSVLTQLQMGFI 787
            G  P++L+ +    RA PGG G  K   NY            +G   VL+L       + EV + N+F+   N      + TP + GTILPG+TR+SI+D+A+       S+                  E+F  GTA  V P+G I YLG+   V    G  G ++ ++++ +  +Q G +
Sbjct:  201 GFKPVSLLADPAYVRAWPGGVGNTKGGCNYAPSIYPQSQAQAQGCQQVLWL-FGEDHEVTEVGTMNLFMYWKNEQGEDELITPPLDGTILPGVTRQSIVDMARGWNEFKVSERKFNMGQVSRALKEGRVYEMFGAGTAATVCPIGQIKYLGEDLNVPLALGNSGELTNRIWTDIFDIQYGAV 381          
BLAST of CB290209 vs. ExPASy Swiss-Prot
Match: BCAT1_MOUSE (Branched-chain-amino-acid aminotransferase, cytosolic OS=Mus musculus GN=Bcat1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 59/189 (31.22%), Postives = 90/189 (47.62%), Query Frame = -2
Query:  254 PINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXXXKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPVIKGTILPGITRKSIIDVAQSQG-FQXXXXXXXXXXXLDA------DEVFCTGTAVVVSPVGSITYLGK--RVSYGEGGFGAVSQQLYSVLTQLQMGFIADKMNWTLEL 778
            P++L    +  RA  GGTG  K  GNY             G   VL+L     + + EV + N+F+   N      ++TP + G ILPG+TR+SI+++AQ  G F+             A       E+F +GTA VV PV  I Y G+   +   E G   ++ ++   LT +Q G +  + +WT+EL
Sbjct:  201 PVSLWANPKYIRAWKGGTGDCKMGGNYGASLLAQCEAVENGCQQVLWLYGKDNQ-ITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRQSILELAQQWGEFKVCERHLTMDDLATALEGNRVKEMFGSGTACVVCPVSDILYKGQMLHIPTMENG-PKLASRILGKLTDIQYGRV--ESDWTIEL 385          
BLAST of CB290209 vs. ExPASy Swiss-Prot
Match: BCAT1_HUMAN (Branched-chain-amino-acid aminotransferase, cytosolic OS=Homo sapiens GN=BCAT1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.302e-11
Identity = 56/189 (29.63%), Postives = 86/189 (45.50%), Query Frame = -2
Query:  251 PINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXXXKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPVIKGTILPGITRKSIIDVAQ-------SQGFQXXXXXXXXXXXLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFG-AVSQQLYSVLTQLQMGFIADKMNWTLELS 778
            P++L    +  RA  GGTG  K  GNY             G   VL+L       + EV + N+F+   N      ++TP + G ILPG+TR+ I+D+A        S+ +                E+F +GTA VV PV  I Y G+ +       G  ++ ++ S LT +Q G   ++ +WT+ LS
Sbjct:  201 PVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWL-YGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYG--REESDWTIVLS 386          
The following BLAST results are available for this feature:
BLAST of CB290209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
BCAT_MONBE2.829e-1129.12Branched-chain-amino-acid aminotransferase OS=Mono... [more]
BCAT1_MOUSE4.825e-1131.22Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCAT1_HUMAN6.302e-1129.63Branched-chain-amino-acid aminotransferase, cytoso... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290209 ID=CB290209; Name=CB290209; organism=Citrus sinensis; type=EST; length=809bp
TATATGTACCCAAGTGAAGCCAAATGGGATGCGGGATGTACTAAGTGGAA
CATACCCAGCAACAAATATTTCTCATAGTAACTTGAGAACAAATTTGAAT
ATCAAACATAAAGAAGGCAGCAAACTAAAGAAATCTGAGTCACCACCGTA
TATTTAGACCCGCCAACAGCTCAGTCCAAGGATCAGTGAACCTATGAAAG
ATGGACAGATTTGAAATGCAAACCAAAACCAGTAACTTAACCATGATCTA
GCTGAGCTCAAGGGTCCAATTCATCTTGTCCGCTATAAAACCCATCTGTA
GTTGGGTAAGCACGGAATATAATTGCTGTGACACCGCACCGAAACCACCC
TCCCCGTAGGATACCCTTTTACCAAGATAAGTGATGCTTCCCACAGGAGA
TACAACAACAGCTGTACCAGTACAAAAAACTTCATCAGCATCAAGTAACT
CCTCCACTGTCACAAGGCGTTCCTCAACCTGGAACCCTTGGCTTTGAGCA
ACATCAATTATACTCTTTCTTGTAATGCCAGGTAAGATAGTTCCTTTTAT
CACAGGAGTGGATATAACATTGCCCTTCACGACAAAAATGTTGCAAGAGG
AAACCTCTTCCAGGTATCTCTTGTGAACACAATCAAGGTAAAGAACATCA
GAATAACCTTTGGCCTTCGCAGCAGATTGAGCCTTAAGAACCGCAGCATA
GTTTCCTATAGTCTTTACGCCTCCAGTTCCCCCAGGAGTTGCACGATGTA
ATTCATGCTCAACAACCAAATTTATGGGTGCAATGCCTTCCCAACGTTTG
TTTGCTAAA
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