CB290211

Overview
NameCB290211
Unique NameCB290211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:631..1399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.969e-15
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = -3
Query:  288 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 704
            K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ L
Sbjct:  126 KILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKL 259          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = -3
Query:  288 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 704
            K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  126 KILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = -3
Query:  288 KLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 704
            K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  126 KILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_DESOH (Putative thiazole biosynthetic enzyme OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=Dole_2426 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.638e-15
Identity = 52/154 (33.77%), Postives = 80/154 (51.95%), Query Frame = -3
Query:  288 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE--EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 743
            ST+ S+  A+  V +FN V  ED++++  R+ G+V NW+ V M       +DP  M A  V+ + GH         K++      +  ++ G K++  + AE   +  TREV PG+ V GM      G PRMG  FG M++SG+K A   L+ L
Sbjct:  108 STLTSQA-AKAGVAIFNCVTVEDVMIRPDRIVGLVLNWSPVEM---AGLHVDPLAMRASFVIDATGHATEVVHVVAKKVPGTLRTDSGKIEGEKSMWSDRAESLTLENTREVYPGLYVAGMAGNATFGGPRMGAIFGGMLLSGEKVAAEILERL 257          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_SULIN (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1140 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.128e-14
Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = -3
Query:  288 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 704
            K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  + G K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  125 KIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IAGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_METBU (Putative thiazole biosynthetic enzyme OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2109 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.128e-14
Identity = 47/142 (33.10%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  285 KLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE-EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 704
            ++FN V  ED++++    + G+V NW  V +    +  +DP  + +KVVV   GH     +T  +++    + E  V G K +  +  E  ++  T+EV P + V GM    + GAPRMGP FG M++SG++ A L ++ LG
Sbjct:  120 EIFNLVNVEDVMIRENDEICGLVINWTAVEIG---KLHVDPLAIRSKVVVDGTGHPAVVCSTVQRKVPGAKLGELGVVGEKPMWADVGEKMLLDTTKEVYPNLYVAGMAANAVAGAPRMGPVFGGMLLSGKQVAELIIERLG 258          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_THENV (Putative thiazole biosynthetic enzyme OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1052 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.473e-14
Identity = 47/141 (33.33%), Postives = 76/141 (53.90%), Query Frame = -3
Query:  288 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 704
            K+   V  +D+I +G   RV G++  W  + M+    S +DP   +A+ V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+   GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  117 KIILGVHVDDVIFRGDPPRVAGLLWVWTPIQMSG---SHVDPLYTQARAVLDATGHDAEVISIASRKVPELGV--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYAAGMAVCAVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_PYRCJ (Putative thiazole biosynthetic enzyme OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.473e-14
Identity = 45/143 (31.47%), Postives = 76/143 (53.15%), Query Frame = -3
Query:  282 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 704
            K+   V  +D+I +G   RV G++  W  + M+      +DP   +AK V+ + GHD    +   +++  +G+  ++ G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L +
Sbjct:  117 KILLGVHVDDVIFRGDPPRVAGLLWIWTPIQMSG---MHVDPLYTQAKAVIDATGHDAEVVSVAARKVPELGL--QLQGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGRKVAEVVAKDLAE 254          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_FERNB (Putative thiazole biosynthetic enzyme OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=Fnod_1422 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.513e-14
Identity = 51/151 (33.77%), Postives = 71/151 (47.02%), Query Frame = -3
Query:  288 LFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKA-------------LDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 701
            +FN V  EDL++   R+ GVV NW         +  +DP  + AK  V   GH     A  V+ L   G+I  V G                +D  + E  +V  T+E+ PG+ V GM    + G PRMGP FG M++SG +AA L  + L
Sbjct:  120 IFNNVFVEDLVMYNERISGVVINWMPTIKE---KLHVDPITVVAKFTVDGTGHP----ANLVRLLSKRGIINSVKGSSENLCSCGVVEYEFPMDAENGEKFVVENTKEIYPGLYVMGMAAVSVGGGPRMGPIFGGMIMSGLRAAELIEEEL 263          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_PYRAE (Putative thiazole biosynthetic enzyme OS=Pyrobaculum aerophilum GN=PAE0175 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 46/141 (32.62%), Postives = 75/141 (53.19%), Query Frame = -3
Query:  288 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 704
            K+   V  +D+I +G   RV G++  W  + M+      +DP   +AK V+ + GHD    +   +++  +G+  +V G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L
Sbjct:  117 KIILGVHVDDVIFRGDPPRVTGLLWIWTPIQMSG---MHVDPLYTQAKAVIDATGHDAEVVSVAARKVPELGI--QVVGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGKKVAEVVYKDL 252          
The following BLAST results are available for this feature:
BLAST of CB290211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
THI4_METM72.969e-1534.53Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM65.064e-1533.81Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM55.064e-1533.81Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_DESOH8.638e-1533.77Putative thiazole biosynthetic enzyme OS=Desulfoco... [more]
THI4_SULIN1.128e-1433.33Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METBU1.128e-1433.10Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_THENV1.473e-1433.33Putative thiazole biosynthetic enzyme OS=Thermopro... [more]
THI4_PYRCJ1.473e-1431.47Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_FERNB2.513e-1433.77Putative thiazole biosynthetic enzyme OS=Fervidoba... [more]
THI4_PYRAE3.282e-1432.62Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290211 ID=CB290211; Name=CB290211; organism=Citrus sinensis; type=EST; length=769bp
AAAGGACAAAGAAATTAAAATTACAGGTTCCATGATGGACCGCAAACAAA
CACTTTATTCACAAAACCTCACAACATTATCTCATTATTCGCATCAACCA
TCCATCACAACCACCTAAATACAACTACTTTTTTGCCAGAGTTTATTTGC
ATGCACACAGCTGATGAGTGATGATGCCTGTTATTACCAAATTAAGCATC
AGCAGTCTCAGCAAAATCAGCTGCAGCTAAAATCAGCTCAGGGTGAACGC
CTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTGACTTCAAC
GCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCAAATGTTGG
CCCCATTCGAGGAGCACCATCAATCTCGGCAACTTCCATGCCGGTAACTA
TCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCA
GAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTCAATCATTCCGAT
ACTCTTCAACCTCTTTACTCCAGTGGCCCCAAAAGGCCCATCATGGCCAC
AAGAGCTCACAACCACCTTCGCTTCCATTACATTGGGATCCATGCAAGAC
TGTGTATCGTGATTCATTGACACCAACGCCCAGTTGGTCACCACACCACC
AACTCTGCCGCCTTTGACTATCAAGTCCTCGGCTGCCACTGCATTAAAGA
GCTTGACGTTGGGGCGGGCCAGGAGCTTGCTCATTATAGTGGAGGTGAAC
AGCGCTGCATGCTTGATCA
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