CB290212

Overview
NameCB290212
Unique NameCB290212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:51..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.569e-47
Identity = 95/164 (57.93%), Postives = 122/164 (74.39%), Query Frame = 1
Query:  262 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNWALVS 732
            D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++ IIE SV+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +         V GVVTNW LV+
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVT 197          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.972e-21
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  289 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 735
            ++E  ++R +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W GG  F+ +VV+  A   LDE GI Y+E +    +  A    +TI SK++ +  VK+FN +  EDL++K  RV G+V NW  V M
Sbjct:    2 LREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMIEVEDLVIKDNRVSGIVINWTPVLM 148          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.576e-21
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  289 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 735
            ++E  +SR +   Y  D++     D    GAG +G+   Y L+K    ++AI E+ +S GGG W G   F+ +VV++ A   LDE G+DY +  N + +  +    ST+ SK + +   K+FN V  EDL+VK GRV G+V NW  V M
Sbjct:    1 MREIEISRAIVEAYFNDLLQNLQLDIAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSVGGGIWGGAMGFNRVVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMVEVEDLVVKDGRVSGLVINWTPVMM 147          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.576e-21
Identity = 56/149 (37.58%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  289 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 735
            +K+ ++SR +   Y  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W GG  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN V  EDL+VK  RV G+V NW  V M
Sbjct:    2 LKDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMVEVEDLVVKDDRVSGIVINWTPVKM 148          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 56/149 (37.58%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  289 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 735
            ++E  +SR +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W GG  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN +  EDL+VK  RV G+V NW  V M
Sbjct:    2 LREVTISRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMIEVEDLVVKDNRVSGIVINWTPVLM 148          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 50/144 (34.72%), Postives = 88/144 (61.11%), Query Frame = 1
Query:  289 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW 720
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W GG +F+ +V+ K    FL E+ I+Y+ +++++V+  +  F S ++ +   +    +FN V+ ED+ V+ GRV GVV NW
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV-DSVHFASGLLYR-ATKAGAIVFNNVSVEDVAVQNGRVCGVVVNW 143          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 50/153 (32.68%), Postives = 86/153 (56.21%), Query Frame = 1
Query:  277 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 735
            K D IK   +SR +   YM D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W GG +F+ +VV+      LDE GI  +  D    +  +   TST+ S+   +  +K+FN ++ ED++++   + G+V NW+ V M
Sbjct:    2 KLDDIK---ISRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR-ACQAGLKIFNLMSIEDVMIRDEGITGLVLNWSSVEM 149          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_METMJ (Putative thiazole biosynthetic enzyme OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_2251 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 49/151 (32.45%), Postives = 78/151 (51.66%), Query Frame = 1
Query:  289 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSM 735
            + E  +SR +       +I + + D    G G +GL+CA  L +   ++ A+IE+ +S GGG W GG +F  +VV++ A   LD  GI Y   ++ Y V K         ++       V+ FN    ED++++G GR+GG+V NW  V M
Sbjct:    3 LNEVTISRAILEEQHRALIDHLEMDAAVIGGGPSGLACAALLGEK-GVKCALIEKKLSIGGGMWGGGMMFPRIVVQEDARRLLDRFGIAYKAFEEGYYVAKSVEAVAK--LTAAACDAGVEFFNLTTVEDVMIRGDGRIGGLVVNWTPVDM 150          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_DESOH (Putative thiazole biosynthetic enzyme OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=Dole_2426 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.369e-14
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 1
Query:  289 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD--EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 735
            + E  +SR +  R+   +I   + D    G G +GL  A+ L++    ++A+ E+ +S GGG W G  LF+ +VV+K A   LD + I Y    +D Y      A+ T T  +   A+  V +FN V  ED++++  R+ G+V NW+ V M
Sbjct:    3 LNEVTISRAIIDRFYEKLIANLEVDVAVVGGGPSGLVAAWRLARAGR-KVALFERKLSIGGGMWGGAMLFNEIVVQKSALHVLDAMEIGYRLYAEDYYTADAVEAISTLTSQA---AKAGVAIFNCVTVEDVMIRPDRIVGLVLNWSPVEM 149          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_METAC (Putative thiazole biosynthetic enzyme OS=Methanosarcina acetivorans GN=MA_2851 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.335e-14
Identity = 48/152 (31.58%), Postives = 81/152 (53.29%), Query Frame = 1
Query:  289 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA---RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS 732
            + E I++R +   Y    + Y D D    G G A L  A  L++   +++A+ EQ +S GGG W GG +F  +VV++ A   LD+ GI Y E ++   + ++       + KL+A       ++FN V+ ED++++   RV G+V NW  V+
Sbjct:    3 LDEVIITRAIFDEYSKTFLDYTDIDVALVGGGPANLVAAKYLAE-AGVKVALYEQKLSLGGGMWAGGMMFPRIVVQEEATRILDDFGIRYKEYESGYYVANSV----ESVGKLIAGATSAGAEVFNLVSFEDIMIRENDRVTGIVINWGPVT 149          
The following BLAST results are available for this feature:
BLAST of CB290212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
THI4_YEAST3.569e-4757.93Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRHO1.972e-2136.91Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO2.576e-2136.91Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU2.576e-2137.58Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB5.738e-2137.58Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_THEMA6.344e-2034.72Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_METTH2.041e-1832.68Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_METMJ7.259e-1632.45Putative thiazole biosynthetic enzyme OS=Methanocu... [more]
THI4_DESOH1.369e-1432.45Putative thiazole biosynthetic enzyme OS=Desulfoco... [more]
THI4_METAC2.335e-1431.58Putative thiazole biosynthetic enzyme OS=Methanosa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290212 ID=CB290212; Name=CB290212; organism=Citrus sinensis; type=EST; length=735bp
GCCCTTAGCATCACTGCTGCAAATCAAATTACTTCTCATTATCTTACTTC
TAAGCAGCAGGGGAAGGAGGGGTAAAAAAAAAAAACCATGGCAGCCATGG
CTTCTACAGCTTTCCCTCCTTCAGTTTCGTCCACCACCAATAAGCTCTTT
GACTCATCCTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCA
ACCCATCAAATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTT
CTCCTCCTTATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCC
ATTGTTTCTCGTGAAATGACACGCAGGTACATGACGGACATGATCACTTA
TGCTGACACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTT
GTGCTTATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAA
CAGTCTGTTAGCCCCGGCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTC
TGCCATGGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCA
TCGACTACGATGAGCAAGACAACTATGTTGTGATCAAGCATGCAGCGCTG
TTCACCTCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCT
CTTTAATGCAGTGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGTTG
GTGGTGTGGTGACCAACTGGGCGTTGGTGTCAATG
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