CB290212

Overview
NameCB290212
Unique NameCB290212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:51..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 46/158 (29.11%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  268 NTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSM 735
            ++ K   I E  +SR + ++ M D + + + D    GAG AG+S AY L+K+  ++  + E+ +S GGG   G  LF  +V+  PA   L E+ I  ++ ++ V I  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M
Sbjct:    3 DSIKIKAIDEVKISRYIIKQTMEDWMNFVENDVVIVGAGPAGMSAAYYLAKH-GLKTLVFERRLSFGGGIGGGAMLFHKLVIESPADEVLKEMNIRLEKVEDGVYIVDSAEFMAKLAASAI-DAGAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM 158          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_METBU (Putative thiazole biosynthetic enzyme OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2109 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 43/150 (28.67%), Postives = 75/150 (50.00%), Query Frame = 1
Query:  289 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSM 735
            + E  +SR +   +    + Y D D    G G A L  A  L++   ++  I E+ ++ GGG W GG +F  +VV++ A   LDE GI Y E +N   + ++      ++S   +    ++FN V  ED++++    + G+V NW  V +
Sbjct:    3 LDEVTISRAIIEEFSKVFLDYTDVDVALVGGGPANLVAAKYLAE-AGLKTVIYEKKLAVGGGMWAGGMMFPRIVVQEDALHILDEFGISYHEYENGYYVANSIESVGKLISGATS-AGAEIFNLVNVEDVMIRENDEICGLVINWTAVEI 150          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 48/154 (31.17%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  289 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLA---RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSM 735
            + E  ++R +   Y+   +   D D    GAG A L  A  L++  ++++ + E+ +S GGG W GG +F  +VV+K A   LDE  I Y E ++ Y V       +  +++KL A       +L N V+ ED++++ G R+ G+V NW    M
Sbjct:    3 LDEVKITRAIVESYLESFLKCTDVDVALVGAGPANLVAAKRLAE-ADVRVVLFEKRLSVGGGLWGGGMMFPRIVVQKEACRILDEYDIWYREFEEGYYVAD-----SIEVVAKLTAGAIDAGAELINLVSVEDVMIREGDRIVGLVINWTAADM 150          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_SULIM (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1670 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 44/155 (28.39%), Postives = 76/155 (49.03%), Query Frame = 1
Query:  277 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSM 735
            K   ++E  +SR + +  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG   G  LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M
Sbjct:    4 KIKQVEEVKISRYIIKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAI-DAGAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM 156          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_SULSO (Putative thiazole biosynthetic enzyme OS=Sulfolobus solfataricus GN=SSO0436 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 45/155 (29.03%), Postives = 75/155 (48.39%), Query Frame = 1
Query:  277 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSM 735
            K   + E  +SR + +  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG   G  LF  +++ KPA   L E+ I   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M
Sbjct:    4 KIKQVDEVKISRYIIKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNIRLKEVEEGVYVVDSAEFMAKLATAAI-DAGAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM 156          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_SULIY (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1786 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 44/155 (28.39%), Postives = 75/155 (48.39%), Query Frame = 1
Query:  277 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSM 735
            K   + E  +SR + +  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG   G  LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M
Sbjct:    4 KIKQVDEVKISRYIIKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAI-DAGAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM 156          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_SULIN (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1140 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 44/155 (28.39%), Postives = 75/155 (48.39%), Query Frame = 1
Query:  277 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSM 735
            K   + E  +SR + +  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG   G  LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M
Sbjct:    4 KIKQVDEVKISRYIIKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAI-DAGAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM 156          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_SULIL (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_1798 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 44/155 (28.39%), Postives = 75/155 (48.39%), Query Frame = 1
Query:  277 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSM 735
            K   + E  +SR + +  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG   G  LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M
Sbjct:    4 KIKQVDEVKISRYIIKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAI-DAGAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM 156          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_SULIK (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1717 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 44/155 (28.39%), Postives = 75/155 (48.39%), Query Frame = 1
Query:  277 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSM 735
            K   + E  +SR + +  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG   G  LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M
Sbjct:    4 KIKQVDEVKISRYIIKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAI-DAGAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM 156          
BLAST of CB290212 vs. ExPASy Swiss-Prot
Match: THI4_SULIA (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.27) GN=M1627_1786 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 44/155 (28.39%), Postives = 75/155 (48.39%), Query Frame = 1
Query:  277 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSM 735
            K   + E  +SR + +  M D   + ++D    GAG +GLS AY L+K   ++  + E+ +S GGG   G  LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M
Sbjct:    4 KIKQVDEVKISRYIIKETMEDWYQFVESDVVIVGAGPSGLSAAYYLAK-AGLKTLVFERRLSFGGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAI-DAGAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM 156          
The following BLAST results are available for this feature:
BLAST of CB290212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
THI4_SULAC7.511e-1329.11Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METBU9.810e-1328.67Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METTP1.281e-1231.17Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_SULIM4.869e-1228.39Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULSO6.359e-1229.03Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIY8.305e-1228.39Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIN8.305e-1228.39Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIL8.305e-1228.39Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIK8.305e-1228.39Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIA8.305e-1228.39Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01aa12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290212 ID=CB290212; Name=CB290212; organism=Citrus sinensis; type=EST; length=735bp
GCCCTTAGCATCACTGCTGCAAATCAAATTACTTCTCATTATCTTACTTC
TAAGCAGCAGGGGAAGGAGGGGTAAAAAAAAAAAACCATGGCAGCCATGG
CTTCTACAGCTTTCCCTCCTTCAGTTTCGTCCACCACCAATAAGCTCTTT
GACTCATCCTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCA
ACCCATCAAATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTT
CTCCTCCTTATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCC
ATTGTTTCTCGTGAAATGACACGCAGGTACATGACGGACATGATCACTTA
TGCTGACACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTT
GTGCTTATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAA
CAGTCTGTTAGCCCCGGCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTC
TGCCATGGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCA
TCGACTACGATGAGCAAGACAACTATGTTGTGATCAAGCATGCAGCGCTG
TTCACCTCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCT
CTTTAATGCAGTGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGTTG
GTGGTGTGGTGACCAACTGGGCGTTGGTGTCAATG
back to top