CB290215

Overview
NameCB290215
Unique NameCB290215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290215_ssr286 microsatellite CB290215_ssr286:286..297. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INVA_MAIZE (Beta-fructofuranosidase, cell wall isozyme OS=Zea mays PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.816e-36
Identity = 74/144 (51.39%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  341 AGVSEKSNRRFGSRTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESV--QVQNLAYPADPSDPLL 766
            AG S   +R   +  A     + +    RT +HFQP  NW+NDPN P++YKGWYHLFYQYNP GA+WG+IVW H+VS+DLI+W  L  A+      D  G W+GSATIL DG   +LYTG     +  QVQ LA P D SDPLL
Sbjct:   26 AGASHVIHRSLEAEAAPSVPASIVSPLLRTGYHFQPPMNWINDPNAPLYYKGWYHLFYQYNPKGAVWGNIVWAHSVSRDLINWVALEPAIYPSIPSDKYGCWSGSATILEDGTPAILYTGIDRADINYQVQVLALPKDASDPLL 169          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV3_ORYSJ (Beta-fructofuranosidase, insoluble isoenzyme 3 OS=Oryza sativa subsp. japonica GN=CIN3 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.843e-35
Identity = 63/114 (55.26%), Postives = 82/114 (71.93%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            RT +HFQP K+W+NDPNGP++YKG YHLFYQYNP GA+WG+I W H+VS DLI W  L   +   + +D  G W+GSAT+L  G  +++YTG   +  QVQN+AYP + SDP L
Sbjct:   47 RTGYHFQPPKHWINDPNGPMYYKGLYHLFYQYNPKGAVWGNIEWAHSVSTDLIDWTALEPGIYPSKTFDEKGCWSGSATVLPSGVPVIMYTGIDPDERQVQNVAYPVNLSDPYL 160          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV3_ORYSI (Beta-fructofuranosidase, insoluble isoenzyme 3 OS=Oryza sativa subsp. indica GN=CIN3 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.843e-35
Identity = 63/114 (55.26%), Postives = 82/114 (71.93%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            RT +HFQP K+W+NDPNGP++YKG YHLFYQYNP GA+WG+I W H+VS DLI W  L   +   + +D  G W+GSAT+L  G  +++YTG   +  QVQN+AYP + SDP L
Sbjct:   47 RTGYHFQPPKHWINDPNGPMYYKGLYHLFYQYNPKGAVWGNIEWAHSVSTDLIDWTALEPGIYPSKTFDEKGCWSGSATVLPSGVPVIMYTGIDPDERQVQNVAYPVNLSDPYL 160          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV3_ARATH (Beta-fructofuranosidase, insoluble isoenzyme CWINV3 OS=Arabidopsis thaliana GN=CWINV3 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.740e-34
Identity = 68/115 (59.13%), Postives = 80/115 (69.57%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWG-DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            RT +HFQP KNWMNDPNGP+ YKG YHLFYQYNP GA+W   IVWGH+ S DL++W   P A    Q  DI G W+GS TIL +GK ++LYTG      QVQN+A P + SDP L
Sbjct:   39 RTGYHFQPLKNWMNDPNGPMIYKGIYHLFYQYNPYGAVWDVRIVWGHSTSVDLVNWISQPPAFNPSQPSDINGCWSGSVTILPNGKPVILYTGIDQNKGQVQNVAVPVNISDPYL 153          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV1_DAUCA (Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.740e-34
Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 2
Query:  407 NMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTN---ESVQVQNLAYPADPSDPLLIK 772
            N+    RT +HFQP++NW+NDPNGP++YKG YHLFYQYNP GA+WG+IVW H+VS DLI+W  L  A+   + +D  G  +GSATIL   K ++LYTG      ++VQVQN A PA+ SDP L K
Sbjct:   54 NVKQVHRTGYHFQPKQNWINDPNGPMYYKGVYHLFYQYNPKGAVWGNIVWAHSVSTDLINWTPLEPAIFPSKPFDKYGCRSGSATILPGNKPVILYTGIVEGPPKNVQVQNYAIPANLSDPYLRK 178          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV6_ORYSJ (Beta-fructofuranosidase, insoluble isoenzyme 6 OS=Oryza sativa subsp. japonica GN=CIN6 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.054e-33
Identity = 64/116 (55.17%), Postives = 83/116 (71.55%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIW--GDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            RTA+HFQP KNW NDPNGPV+Y G YHLFYQYNP+GA+W  G++ WGH+VS DL++W  L  A+     +D  G  +GS TIL DG  +++Y+G      QVQN+A+P +P DPLL
Sbjct:   38 RTAYHFQPAKNWQNDPNGPVYYNGMYHLFYQYNPHGALWDVGNLSWGHSVSGDLVNWAALDNALDPTAPFDANGCASGSVTILPDGVPVVMYSGIDARRRQVQNVAFPKNPRDPLL 153          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV7_ORYSJ (Beta-fructofuranosidase, insoluble isoenzyme 7 OS=Oryza sativa subsp. japonica GN=CIN7 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.571e-32
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  422 QRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIW--GDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            +RTA+HFQP KNW NDPNGP+++ G YHLFYQYNP+ A+W  G++ WGH+VS DL++W  L  A+     +D  G W+GSATIL      +LYTG      QVQN+A+  +PSDPLL
Sbjct:   39 RRTAYHFQPAKNWQNDPNGPMYHNGMYHLFYQYNPHSALWDIGNLSWGHSVSGDLLNWAALDTALDPTSPFDANGCWSGSATILPGALPAILYTGIDASKEQVQNVAFAKNPSDPLL 155          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV7_ORYSI (Beta-fructofuranosidase, insoluble isoenzyme 7 OS=Oryza sativa subsp. indica GN=CIN7 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.571e-32
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  422 QRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIW--GDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            +RTA+HFQP KNW NDPNGP+++ G YHLFYQYNP+ A+W  G++ WGH+VS DL++W  L  A+     +D  G W+GSATIL      +LYTG      QVQN+A+  +PSDPLL
Sbjct:   39 RRTAYHFQPAKNWQNDPNGPMYHNGMYHLFYQYNPHSALWDIGNLSWGHSVSGDLLNWAALDTALDPTSPFDANGCWSGSATILPGALPAILYTGIDASKEQVQNVAFAKNPSDPLL 155          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV5_ORYSJ (Beta-fructofuranosidase, insoluble isoenzyme 5 OS=Oryza sativa subsp. japonica GN=CIN5 PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.737e-31
Identity = 60/116 (51.72%), Postives = 80/116 (68.97%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIW--GDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            RTA+HFQP K W NDPNGP+++ G YH FYQYNP+G +W  G + WGH+VS DL++W  L  A+     +D+ G W+GSAT+L  G+   LYTG     VQVQN+++  +P DPLL
Sbjct:   39 RTAYHFQPAKFWQNDPNGPLYHNGLYHFFYQYNPHGPLWDTGKLSWGHSVSGDLVNWAFLGTAIDPTDPFDVNGCWSGSATVLLGGRPAFLYTGRDAGGVQVQNVSFAKNPLDPLL 154          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV6_ARATH (Beta-fructofuranosidase, insoluble isoenzyme CWINV6 OS=Arabidopsis thaliana GN=CWINV6 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.269e-31
Identity = 63/117 (53.85%), Postives = 84/117 (71.79%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWG--DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTG-STNESVQVQNLAYPADPSDPLL 766
            RT+FHFQPQ+NW+NDPN P++YKG+YHLFYQ NP    +    I+WGH+VS+D+++W  L  A+V  + +DI   W+GSATIL DG+ ++LYTG   N   QV  +A P D SDPLL
Sbjct:   17 RTSFHFQPQRNWLNDPNAPMYYKGFYHLFYQNNPLAPEFSRTRIIWGHSVSQDMVNWIQLEPALVPSESFDINSCWSGSATILPDGRPVILYTGLDVNNKQQVTVVAEPKDVSDPLL 133          
The following BLAST results are available for this feature:
BLAST of CB290215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
INVA_MAIZE6.816e-3651.39Beta-fructofuranosidase, cell wall isozyme OS=Zea ... [more]
INV3_ORYSJ9.843e-3555.26Beta-fructofuranosidase, insoluble isoenzyme 3 OS=... [more]
INV3_ORYSI9.843e-3555.26Beta-fructofuranosidase, insoluble isoenzyme 3 OS=... [more]
INV3_ARATH3.740e-3459.13Beta-fructofuranosidase, insoluble isoenzyme CWINV... [more]
INV1_DAUCA3.740e-3455.20Beta-fructofuranosidase, insoluble isoenzyme 1 OS=... [more]
INV6_ORYSJ7.054e-3355.17Beta-fructofuranosidase, insoluble isoenzyme 6 OS=... [more]
INV7_ORYSJ1.571e-3253.85Beta-fructofuranosidase, insoluble isoenzyme 7 OS=... [more]
INV7_ORYSI1.571e-3253.85Beta-fructofuranosidase, insoluble isoenzyme 7 OS=... [more]
INV5_ORYSJ1.737e-3151.72Beta-fructofuranosidase, insoluble isoenzyme 5 OS=... [more]
INV6_ARATH2.269e-3153.85Beta-fructofuranosidase, insoluble isoenzyme CWINV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290215 ID=CB290215; Name=CB290215; organism=Citrus sinensis; type=EST; length=774bp
GCCCTATGATTGAAACCAACAAATTTATCAAGCAGCAGCCCTCTAGTGCG
CCACATACATTCGTTAATCAATGGCAGATTCTAATGTATCCTACAATCCT
CTCCCGGACGGGGAACGTCCGCGGCCAACTCGCCGGAGATCCATCGTCTT
GGTTCTATCCGGTTTGTTGGTCGTTGGTTTTTTAGTTGCATTATTATCCG
ATAATGGATCAATAGCCCCTGCTAACGTTATTGATAATGACAATAATAAT
GTTAATGATAATGCAAAAAATGGGCTTAATGATGTGTCGTCGTCGTCGAA
AGAGCCCGAGAGACTCCGGCCGTTTACGAGTGCCTCGTCGGCCGGGGTGT
CTGAGAAGTCGAACCGGCGGTTTGGTTCAAGGACGGCGTCGTATCCCTGG
ACCAATAATATGCTGTCGTGGCAAAGGACCGCCTTCCACTTTCAACCCCA
AAAGAATTGGATGAATGATCCTAATGGTCCAGTGTTTTACAAAGGATGGT
ACCATTTGTTCTACCAGTACAACCCAAATGGCGCAATATGGGGTGACATA
GTGTGGGGGCATGCTGTGTCAAAGGACCTGATCCATTGGTATCACCTCCC
GTTGGCCATGGTTGCCGATCAATGGTATGATATTATGGGTGTCTGGACCG
GCTCTGCTACAATCCTATCTGATGGAAAACTTATGATGTTGTACACTGGA
TCCACCAACGAGTCTGTGCAGGTCCAAAATCTCGCATATCCTGCCGACCC
ATCTGATCCTCTCCTCATCAAATG
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