CB290216

Overview
NameCB290216
Unique NameCB290216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATL1_HUMAN (Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 36/81 (44.44%), Postives = 46/81 (56.79%), Query Frame = -1 
Query:  560 AFQLYESGI-FTGRCGTS-LDHGVTAVGYGTENGAD----YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +F  Y+ GI F   C +  +DHGV  VGYG E+       YW+VKNSWG  WG  GY++M ++        CGIA  ASYP
Sbjct:  255 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKD----RRNHCGIASAASYP 331
The following BLAST results are available for this feature:
BLAST of CB290216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CATL1_HUMAN7.803e-1144.44Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290216 ID=CB290216; Name=CB290216; organism=Citrus sinensis; type=EST; length=784bp
ATTCCTCTAATTCAACGCCAATAGATAACTTACAACGCTATATACCAATA
CCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAA
CGTTTGGAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCAT
TCACAAGCACGAATATTTTCATCCTCCTTTCGGCCTTCCACTGCTCTTAC
AGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGC
CCAGTAAGGTTTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGT
TGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAG
TCATGTGGGCAGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAG
CGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGC
AGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGA
GGCTTTGTTGGAAATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCC
TTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGA
GAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAG
CTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGT
GCCATATCCAACAGCAGTAACACCATGGTCCAAAGATGTCCCACATCTTC
CCGTAAATATACCCGATTCATATAACTGGAATGC
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