CB290216

Overview
NameCB290216
Unique NameCB290216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:422..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CPGP1_ZINOF (Zingipain-1 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.760e-22
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = -1
Query:  551 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKK 781
            FQLY +GIFTG C  S +H  T  G  TEN  DYW VKNSWG +WGE+GYIR+ERN+A + +GKCGIA+  SYPIK+
Sbjct:  143 FQLYRNGIFTGSCNISANHYRTVGGRETENDKDYWTVKNSWGKNWGESGYIRVERNIAES-SGKCGIAISPSYPIKE 218          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSEP_PHAVU (Vignain OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.522e-22
Identity = 48/81 (59.26%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  542 FQLYESGIFTGRCGTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQN 781
            FQ Y  G+FTG C T L+HGV  VGYGT  +G +YWIV+NSWG  WGE GYIRM+RN++    G CGIAM  SYPIK   +
Sbjct:  270 FQFYSEGVFTGDCSTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEHGYIRMQRNIS-KKEGLCGIAMLPSYPIKNSSD 349          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.676e-21
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  554 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 781
            FQ Y  G+F GRCG  LDHGV AVGYG+  G+DY IVKNSWG  WGE GYIR++RN  G   G CGI   AS+P K
Sbjct:  280 FQFYSGGVFDGRCGVDLDHGVAAVGYGSSKGSDYIIVKNSWGPKWGEKGYIRLKRN-TGKPEGLCGINKMASFPTK 354          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.876e-21
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -1
Query:  554 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 781
            FQLY+SG+F G CGT LDH VTAVGYGT +G +Y I+KNSWG +WGE GY+R++R  +G   G CG+   + YP K
Sbjct:  275 FQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQ-SGNSQGTCGVYKSSYYPFK 349          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.419e-20
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = -1
Query:  542 FQLYESGIFTGRCGTSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP-IKKGQN 781
            FQ Y  G+F+G CGTSL+H +T +GYG ++ G  YWIV+NSWGSSWGE GY+RM R V+ + +G CGIAM   +P ++ G N
Sbjct:  261 FQYYNGGVFSGPCGTSLNHAITIIGYGQDSSGTKYWIVRNSWGSSWGEGGYVRMARGVSSS-SGVCGIAMAPLFPTLQSGAN 341          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.494e-19
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = -1
Query:  560 AFQLYESGIFTGR-CG-TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +FQ Y SG++  + C  T LDHGV AVGYGTE+  DYW+VKNSWGSSWG+AGYI+M RN        CGIA E SYP
Sbjct:  247 SFQFYSSGVYYEQNCSPTFLDHGVLAVGYGTESTKDYWLVKNSWGSSWGDAGYIKMSRN----RDNNCGIASEPSYP 319          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.960e-19
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = -1
Query:  554 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 781
            FQLY+ GIF G CGT +DH VTAVGYG   G  Y ++KNSWG++WGE GYIR++R   G   G CG+   + YP K
Sbjct:  273 FQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKR-APGNSPGVCGLYKSSYYPTK 347          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.328e-18
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  554 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 781
            FQ Y+ GIF G CGT +DH VTAVGYG   G  Y ++KNSWG  WGE GYIR+ R  +G   G CG+   + YPIK
Sbjct:  273 FQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRI-RRASGNSPGVCGVYRSSYYPIK 347          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ANAN_ANACO (Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.328e-18
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = -1
Query:  560 FQLYESGIFTGRCGTSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 781
            FQ Y+ G+FTG CGT L+H +  +GYG ++ G  +WIV+NSWG+ WGE GYIR+ R+V+ +  G CGIAM+  YP
Sbjct:  261 FQHYKRGVFTGPCGTRLNHAIVIIGYGQDSSGKKFWIVRNSWGAGWGEGGYIRLARDVSSSF-GLCGIAMDPLYP 334          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: MDO1_PSEMR (Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.917e-17
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = -1
Query:  560 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 781
            FQ Y+ G+++G CG SL+H +T +GYG ++   YWIV+NSWGSSWG+ GY+R+ R+V+ +  G CGIAM   +P
Sbjct:  141 FQYYKGGVYSGPCGFSLNHAITIIGYGRDS---YWIVRNSWGSSWGQGGYVRIRRDVSHS-GGVCGIAMSPLFP 210          
The following BLAST results are available for this feature:
BLAST of CB290216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
CPGP1_ZINOF5.760e-2262.34Zingipain-1 OS=Zingiber officinale PE=1 SV=1[more]
CYSEP_PHAVU7.522e-2259.26Vignain OS=Phaseolus vulgaris PE=2 SV=2[more]
XCP2_ARATH1.676e-2161.84Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
PAPA2_CARPA4.876e-2157.89Chymopapain OS=Carica papaya PE=1 SV=2[more]
BROM1_ANACO1.419e-2054.88Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
CYSP3_HOMAM3.494e-1961.04Digestive cysteine proteinase 3 OS=Homarus america... [more]
PAPA3_CARPA5.960e-1955.26Caricain OS=Carica papaya PE=1 SV=2[more]
PAPA4_CARPA1.328e-1855.26Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
ANAN_ANACO1.328e-1853.33Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2[more]
MDO1_PSEMR1.917e-1751.35Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290216 ID=CB290216; Name=CB290216; organism=Citrus sinensis; type=EST; length=784bp
ATTCCTCTAATTCAACGCCAATAGATAACTTACAACGCTATATACCAATA
CCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAA
CGTTTGGAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCAT
TCACAAGCACGAATATTTTCATCCTCCTTTCGGCCTTCCACTGCTCTTAC
AGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGC
CCAGTAAGGTTTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGT
TGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAG
TCATGTGGGCAGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAG
CGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGC
AGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGA
GGCTTTGTTGGAAATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCC
TTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGA
GAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAG
CTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGT
GCCATATCCAACAGCAGTAACACCATGGTCCAAAGATGTCCCACATCTTC
CCGTAAATATACCCGATTCATATAACTGGAATGC
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