CB290216

Overview
NameCB290216
Unique NameCB290216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.056e-16
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  554 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 781
            FQ Y+ GI+ G CGT+ DH VTAVGY    G  Y ++KNSWG +WGE GYIR++R  +G   G CG+   + +PIK
Sbjct:  141 FQFYKGGIYEGPCGTNTDHAVTAVGY----GKTYLLLKNSWGPNWGEKGYIRIKR-ASGRSKGTCGVYTSSFFPIK 211          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.056e-16
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = -1
Query:  557 FQLYESGIFTGRCGTSL--DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 781
            F +Y SGI+  +  + L  +H V AVGYGT+ G DYWIVKNSWG+ WGE GYIRM RN        CGIA  AS P+
Sbjct:  249 FMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARNRG----NMCGIASLASLPM 321          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.052e-15
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  557 AFQLYESGIFT-GRCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 784
            +F+LY+SG++T   CG++   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CGIA  ASYP+
Sbjct:  282 SFRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDKGYFKMEMG-----KNMCGIATCASYPV 356          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = -1
Query:  542 YESGIFTGRCGTSL-DHGVTAVGYGTENG-ADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQN 772
            Y+SG++ G C     DH V  VGYGT +   DYW+++NSWG  WGE GY+R++RN     TGKC +A+   YPIK   +
Sbjct:  274 YKSGVYKGACSNLWGDHNVLIVGYGTSSDEGDYWLIRNSWGPEWGEGGYLRLQRNFHEP-TGKCAVAVAPVYPIKSNSS 351          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = -1
Query:  557 FQLYESGIFTG-RCGTSLD---HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 781
            F+ Y+SG++T   CGT+ D   H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          C IA  ASYP+
Sbjct:  286 FRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCAIATCASYPV 359          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.222e-15
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = -1
Query:  557 AFQLYESGIFTG-RCGT-SLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 784
            +FQ Y  G++   +C   +LDHGV  VG+GT E+G DYW+VKNSWG++WG+ G+I+M RN       +CGIA  +SYP+
Sbjct:  296 SFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRN----KENQCGIASASSYPL 370          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.222e-15
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = -1
Query:  557 AFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 784
            +FQ Y+SGI+    C +  LDHGV  VGYG E G  YWIVKNSWG  WG+ GYI M ++        CGIA  ASYP+
Sbjct:  144 SFQFYQSGIYYEPDCSSEDLDHGVLVVGYGFEGGKKYWIVKNSWGEKWGDKGYIYMAKD----RKNHCGIATAASYPL 217          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = -1
Query:  557 FQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 781
            F+ Y+SG++    CG +   ++H V AVGYG ENG  YW++KNSWG+ WGE GY +ME          CG+A  ASYPI
Sbjct:  281 FKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTPYWLIKNSWGADWGEDGYFKMEMG-----KNMCGVATCASYPI 354          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  560 AFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 784
            +F LY SG++    C   ++HGV  +GYG  NG +YW+VKNSWGS++GE GYIRM RN        CGIA   SYP
Sbjct:  257 SFFLYRSGVYYDPACTQKVNHGVLVIGYGDLNGKEYWLVKNSWGSNFGEQGYIRMARNKG----NHCGIASYPSYP 328          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = -1
Query:  554 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 784
            AFQLY+ GIF G CG   DH VTA+GYG     D    KNSWG +WGE GYI+++R  +G   G CG+   + +PIK
Sbjct:  141 AFQLYKGGIFNGPCGYKNDHAVTAIGYGKAQLLD----KNSWGPNWGEKGYIKIKR-ASGKSEGTCGVYKSSYFPIK 212          
The following BLAST results are available for this feature:
BLAST of CB290216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
MEX1_JACME8.056e-1651.32Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATLL_FASHE8.056e-1654.55Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
ALEU_ARATH1.052e-1547.50Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CPR2_ARATH3.061e-1546.84Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
ALEU_HORVU3.061e-1549.37Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATL_DROME5.222e-1549.37Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATL1_CHICK5.222e-1552.56Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CYSP3_SOLLC6.820e-1548.10Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CATS_SAIBB6.820e-1551.32Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
MEX2_JACME8.907e-1550.65Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290216 ID=CB290216; Name=CB290216; organism=Citrus sinensis; type=EST; length=784bp
ATTCCTCTAATTCAACGCCAATAGATAACTTACAACGCTATATACCAATA
CCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAA
CGTTTGGAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCAT
TCACAAGCACGAATATTTTCATCCTCCTTTCGGCCTTCCACTGCTCTTAC
AGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGC
CCAGTAAGGTTTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGT
TGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAG
TCATGTGGGCAGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAG
CGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGC
AGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGA
GGCTTTGTTGGAAATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCC
TTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGA
GAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAG
CTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGT
GCCATATCCAACAGCAGTAACACCATGGTCCAAAGATGTCCCACATCTTC
CCGTAAATATACCCGATTCATATAACTGGAATGC
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