CB290217

Overview
NameCB290217
Unique NameCB290217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290217 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.716e-28
Identity = 67/182 (36.81%), Postives = 102/182 (56.04%), Query Frame = 1
Query:  214 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKDYPYKAID 759
            FE +L  + K YN   EKE+RF IF++ L  I+  N  N +    +N+FADL+  E  S + G     + T+          P  G   P + DWR++  V  +K+Q +CG+CWAF+T+A++E    I     I LSEQ+++DCD   + GC+GGL+  AFE +I  G +  E +YPY  ++
Sbjct:   31 FETFLANYNKMYNDTSEKERRFSIFQQTLEEINYKNRLNDSAVYQINKFADLSKNEIISKYTGLNMPVQTTNFCKTIVIDQPPGKG---PLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDCD-YVDMGCDGGLLHTAFEQMIQMGELVQEHEYPYAGVN 208          
BLAST of CB290217 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.716e-28
Identity = 70/180 (38.89%), Postives = 104/180 (57.78%), Query Frame = 1
Query:  214 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKDYPYKA 753
            FE ++ +  K Y++  EK +RF+IF+ NL  I   N +N + K  +N+F+DL+ +E  + + G     +  +          P  G   P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I    LI+LSEQ+++DCD   + GCNGGL+  AFE II  GG+  E DYPY+A
Sbjct:   28 FEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKN-QNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILLDQPPGKG---PLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMIDCD-FVDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEA 202          
BLAST of CB290217 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.716e-28
Identity = 71/188 (37.77%), Postives = 107/188 (56.91%), Query Frame = 1
Query:  211 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDE--HNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDW--RKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEKDYPYKAID 759
            ++  W +K+ + Y    ++  R+++F +NL +I     + E  T+ + LN+FAD++ +E+   +L  +    RT+  +  ++ +  +  E     VDW   KK     VK+QGSCGSCWAFS + A+E    I       LSEQ+LVDC   Y N+GCNGG MD AFE++ DN G+   KDYPY A D
Sbjct:   25 LYANWKMKYNRRYTNQRDEMYRYKVFTDNLNYIRAFYESPEEATFTLELNQFADMSQQEFAQTYLSLK--VPRTAKLNAANSNFQYKGAE-----VDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNRKYELSEQDLVDCSGPYDNDGCNGGWMDSAFEYVADN-GLAEAKDYPYTAKD 204          
BLAST of CB290217 vs. ExPASy Swiss-Prot
Match: CATV_NPVRO (Viral cathepsin OS=Rachiplusia ou multiple nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.771e-28
Identity = 71/180 (39.44%), Postives = 104/180 (57.78%), Query Frame = 1
Query:  214 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKDYPYKA 753
            FE ++ +  K Y +  EK +RF+IF+ NL  I   N +N + K  +N+F+DL+ +E  + + G     +  +          P  G   P   DWR+   V  VK+QG CG+CWAF+T+A++E    I    LI+LSEQ+++DCD   + GCNGGL+  AFE II  GG+  E DYPY+A
Sbjct:   28 FEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIIIKN-QNDSAKYEINKFSDLSKDETIAKYTGLSLPIQTQNFCKVIVLDQPPGKG---PLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCD-FVDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEA 202          
BLAST of CB290217 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.146e-27
Identity = 70/184 (38.04%), Postives = 106/184 (57.61%), Query Frame = 1
Query:  211 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLP---RVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKDYPYK 750
            +F+ ++  + + Y +  E + R  +F  N+    +  + +R T + G+ +F+DLT EE+ +++L          L  K S R +     + +  P   DWRKKGAV EVK+QG CGSCWAFS    VEG   +  G+L+SLSEQEL+DCD   ++ C GGL   A+  I + GG++TE DY Y+
Sbjct:  164 LFKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYLNP--------LLQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCD-KVDKACLGGLPSNAYAAIKNLGGLETEDDYGYQ 338          
BLAST of CB290217 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 53/90 (58.89%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  481 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKDYPYK 750
            P+S+DWR+KGAV  VK+Q  CGSCWAFST+A +EGINKI+TG LISLSEQEL+DC+   + GC+GG    + ++++DN G+ TE++YPY+
Sbjct:    2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCEYR-SHGCDGGYQTPSLQYVVDN-GVHTEREYPYE 89          
BLAST of CB290217 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 66/187 (35.29%), Postives = 102/187 (54.55%), Query Frame = 1
Query:  211 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEA----LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKDYPYKAID 759
            +F+ + +K+ K Y +  E+  + E FK NL+ I+E N  ++     +N ++DL          G R G K+       +   +  + +     LP+++DWR K  V  VK+Q  CGSCWAFSTIA +E +  I     ++LSEQ LV+CD + N GC GGLM +A E I+  GG+ + ++ PY   D
Sbjct:   31 LFKNFAIKYNKTYVSDEERAIKLENFKNNLKMINEKNMASKYAVFDINEYSDLNKNALLRRTTGFRLGLKKNPSAFTMTECSVVVIKDEPQALLPETLDWRDKHGVTPVKNQMECGSCWAFSTIANIESLYNIKYDKALNLSEQHLVNCD-NINNGCAGGLMHWALESILQEGGVVSAENEPYYGFD 216          
BLAST of CB290217 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 67/181 (37.02%), Postives = 106/181 (58.56%), Query Frame = 1
Query:  214 FEAWLVKHGKAYNALGEKEKRFEIFKENLR-FIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKDYPYKA 753
            FE ++ ++ K Y++  EK +R++IF+ NL   I ++ ++   YK+  N+F+DL+ +E  + + G        +          P  G   P   DWR+   +  VK+QG CG+CWAF+T+A++E    I    LI+LSEQ+++DCD S + GC GGL+  AFE II  GG+  E DYPY++
Sbjct:   28 FEEFVRQYNKQYDSEYEKLRRYKIFQHNLNDIITKNRNDTAVYKI--NKFSDLSKDETIAKYTGLSLPLHTQNFCEVVVLDRPPGKG---PLEFDWRRFNKITSVKNQGMCGACWAFATLASLESQFAIAHDRLINLSEQQMIDCD-SVDVGCEGGLLHTAFEAIISMGGVQIENDYPYES 202          
BLAST of CB290217 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.654e-26
Identity = 69/187 (36.90%), Postives = 102/187 (54.55%), Query Frame = 1
Query:  214 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVG----LNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEKDYPYKAID 759
            ++ W +K+GKAY+   E +KR  ++++N++ I  HN EN   K G    +N F D+T EE+R + +             K+      R+   LP  ++W+K+G V  V+ QG C SCWAFS   A+EG     TG LI LS Q LVDC     N GC  G    A  ++++NGG+++E  YPY+  D
Sbjct:   29 WQKWKIKYGKAYSLEEEGQKR-AVWEDNMKKIKLHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIPVPTV------KKGKSVQKRLSVNLPKFINWKKRGYVTPVQTQGRCNSCWAFSVTGAIEGQMFRKTGQLIPLSVQNLVDCSRPQGNWGCYLGNTYLALHYVMENGGLESEATYPYEEKD 208          
BLAST of CB290217 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.160e-26
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 1
Query:  478 LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEKDYPYKAID 759
            +P SVDW KKG V  VK+QG CGSCWAFS   A+EG     TG L+SLSEQ LVD      N+GCNGGLMD AF++I +NGG+D+E+ YPY+A D
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSRPQGNQGCNGGLMDNAFQYIKENGGLDSEESYPYEATD 95          
The following BLAST results are available for this feature:
BLAST of CB290217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CATV_NPVBS6.716e-2836.81Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CATV_NPVBM6.716e-2838.89Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATL1_PARTE6.716e-2837.77Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATV_NPVRO8.771e-2839.44Viral cathepsin OS=Rachiplusia ou multiple nucleop... [more]
CATF_MOUSE1.146e-2738.04Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
MEX1_JACME3.333e-2758.89Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATV_GVCP3.333e-2735.29Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATV_NPVEP5.685e-2737.02Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
CATM_MOUSE1.654e-2636.90Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
CATL1_SHEEP2.160e-2660.00Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290217 ID=CB290217; Name=CB290217; organism=Citrus sinensis; type=EST; length=759bp
GTCTTTAGCATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAATAGTT
CTTTTCTCAAAAGATGGGTTTGTTTAGATCACCAACCATGGCCATGTTTT
TACTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCT
TATGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGA
GGTTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATA
ACGCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTT
AGGTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTT
GAACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGG
GTGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAAC
CGTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAG
GAAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTT
GCTGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTT
ACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATAC
ATCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGT
TCATTATTGATAATGGAGGTATTGACACAGAAAAAGATTACCCCTACAAA
GCCATTGAT
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