CB290274

Overview
NameCB290274
Unique NameCB290274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ECO81 (Pyridoxine kinase OS=Escherichia coli O81 (strain ED1a) GN=pdxK PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKDCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ECO45 (Pyridoxine kinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=pdxK PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKDCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_SHIFL (Pyridoxine kinase OS=Shigella flexneri GN=pdxK PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.552e-16
Identity = 57/179 (31.84%), Postives = 92/179 (51.40%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +   +  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRAFQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_SALTY (Pyridoxine kinase OS=Salmonella typhimurium GN=pdxK PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16
Identity = 57/179 (31.84%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G  V  + +V FSN   Y TF G ++  +     +  L E + L     + TGY+GS   +  + + +  +R+ +P +  + DPV+GD +  +YV +E+   YR  ++P A  LTPN FE E L+G    +  +   A + L +     VVITS
Sbjct:   23 IVAVQSQVVYGSVGNSIAVPAIKAQGLRVTAVPTVLFSNTPHYKTFYGGIIPAEWFAGYLTALNERDALRELKAITTGYMGSADQIVLLSKWLMAIRASHPEVCILVDPVIGDTDSGMYVQAEIPQAYRTHLLPQAQGLTPNVFELEMLSGKPCRTLEEAVAAAQSLLSDTLKWVVITS 201          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_SALCH (Pyridoxine kinase OS=Salmonella choleraesuis GN=pdxK PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16
Identity = 57/179 (31.84%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G  V  + +V FSN   Y TF G ++  +     +  L E + L     + TGY+GS   +  + + +  +R+ +P +  + DPV+GD +  +YV +E+   YR  ++P A  LTPN FE E L+G    +  +   A + L +     VVITS
Sbjct:   23 IVAVQSQVVYGSVGNSIAVPAIKAQGLRVTAVPTVLFSNTPHYKTFYGGIIPAEWFAGYLTALNERDALRELKAITTGYMGSADQIVLLSKWLMAIRASHPEVCILVDPVIGDTDSGMYVQAEIPQAYRTHLLPQAQGLTPNVFELEMLSGKPCRTLEEAVAAAQSLLSDTLKWVVITS 201          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_SALPA (Pyridoxine kinase OS=Salmonella paratyphi A GN=pdxK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 57/179 (31.84%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G  V  + +V FSN   Y TF G ++  +     +  L E + L     + TGY+GS   +  + + +  +R+ +P +  + DPV+GD +  +YV +E+   YR  ++P A  LTPN FE E L+G    +  +   A + L +     VVITS
Sbjct:   23 IVAVQSQVVYGSVGNSIAVPAIKAQGLRVTAVPTVLFSNTPHYKTFYGGIIPAEWFAGYLTALNERDALRELKAITTGYMGSADQIVLLSKWLMAIRASHPEVCILVDPVIGDTDSGMYVQAEIPQAYRTYLLPQAQGLTPNVFELEMLSGKPCRTLEEAVAAAQSLLSDTLKWVVITS 201          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ECOSM (Pyridoxine kinase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=pdxK PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.425e-16
Identity = 57/179 (31.84%), Postives = 92/179 (51.40%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  + +L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHSDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_SALTI (Pyridoxine kinase OS=Salmonella typhi GN=pdxK PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.813e-15
Identity = 56/179 (31.28%), Postives = 92/179 (51.40%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G  V  + +V FSN   Y TF G ++  +     +  L E + L     + TG +GS   +  + + +  +R+ +P +  + DPV+GD +  +YV +E+   YR  ++P A  LTPN FE E L+G    +  +   A + L +     VVITS
Sbjct:   23 IVAVQSQVVYGSVGNSIAVPAIKAQGLRVTAVPTVLFSNTPHYKTFYGGIIPAEWFAGYLTALNERDALRELKAITTGNMGSADQIVLLSKWLMAIRASHPEVCILVDPVIGDTDSGMYVQAEIPQAYRTHLLPQAQGLTPNVFELEMLSGKPCRTLEEAVAAAQSLLSDTLKWVVITS 201          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_RALME (Pyridoxine kinase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=pdxK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.209e-15
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLY-YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 606
            V+S+QS  V G+VGN  A+  L+  G +V  + +V FSN   YPT  G  L        +  L A   L     +L GY+G+   +  + + + ++ + +P++  + DPV+GD +  +YV   +V   RE ++P+A  LTPN FE   L+G
Sbjct:   18 VVSVQSQVVYGHVGNNVALPTLRAHGLNVAAVPTVMFSNTPHYPTLHGGALPIDWFGGYLSDLSARGALQRLKAILVGYLGNPEQVAVLSRWINQVLAEHPDVQVIVDPVIGDHDTGIYVADGMVEAVRELLLPLAHGLTPNDFELGHLSG 168          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_BORPA (Pyridoxine kinase OS=Bordetella parapertussis GN=pdxK PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14
Identity = 57/179 (31.84%), Postives = 86/179 (48.04%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            V+SIQS  V G VGN  AV      G  V  + +V  SN   YP+  G  +        +  L A   L    ++  GY+G  +    + + +  L ++ P+L    DPV+GD +  +YV   +V+ YR+ ++P+A  LTPN FE E LTG   G+      A + L       V++TS
Sbjct:   18 VVSIQSQVVYGQVGNSVAVPVFNGFGLRVAAVPTVVLSNTPHYPSMHGGAVPLDWFEGYLADLGARGALAGVRVVQLGYLGGPAQAEALGRWIAGLVAVRPDLRVHIDPVIGDHDSGVYVAPGMVAAYRDHLLPLAQGLTPNGFELECLTGLPTGTMEQTIAAARTLLGGRARWVIVTS 196          
The following BLAST results are available for this feature:
BLAST of CB290274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PDXK_ECO811.496e-1632.40Pyridoxine kinase OS=Escherichia coli O81 (strain ... [more]
PDXK_ECO451.496e-1632.40Pyridoxine kinase OS=Escherichia coli O45:K1 (stra... [more]
PDXK_SHIFL2.552e-1631.84Pyridoxine kinase OS=Shigella flexneri GN=pdxK PE=... [more]
PDXK_SALTY4.353e-1631.84Pyridoxine kinase OS=Salmonella typhimurium GN=pdx... [more]
PDXK_SALCH4.353e-1631.84Pyridoxine kinase OS=Salmonella choleraesuis GN=pd... [more]
PDXK_SALPA5.685e-1631.84Pyridoxine kinase OS=Salmonella paratyphi A GN=pdx... [more]
PDXK_ECOSM7.425e-1631.84Pyridoxine kinase OS=Escherichia coli (strain SMS-... [more]
PDXK_SALTI4.813e-1531.28Pyridoxine kinase OS=Salmonella typhi GN=pdxK PE=3... [more]
PDXK_RALME8.209e-1533.11Pyridoxine kinase OS=Ralstonia metallidurans (stra... [more]
PDXK_BORPA5.321e-1431.84Pyridoxine kinase OS=Bordetella parapertussis GN=p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290274 ID=CB290274; Name=CB290274; organism=Citrus sinensis; type=EST; length=744bp
GCCCTTAGGAGTTGCCGTCCTTGTTTGGGCACTTCCCGAAACCTCACGTT
TTCCGGCTTGATAGCAGCTTCCGATTGGATTTGTAGGAGGAGAAGCTCGA
GCATATCAGGAATGGCGCCTCCGATTCTCTCATTGGCTTTACCTTCGGAG
ACTGGTCGAGTTTTGAGCATACAGTCGCATACTGTTCAGGGGTATGTTGG
AAATAAATCAGCTGTCTTTCCTCTCCAACTACTGGGCTATGACGTGGATC
CAATCCATTCAGTACAGTTCTCAAACCACACAGGATACCCAACTTTCAAG
GGCCAAGTTTTGAATGGACAACAATTATGCGACTTAATAGAAGGACTGGA
AGCCAATAATCTATTGTACTATACTCATTTATTAACAGGTTATATTGGTT
CTGTTTCTTTTCTGAACACGATACTGCAAGTTGTTGAAAAGCTTCGCTCT
ATAAACCCAAATCTGATATACGTTTGTGATCCAGTGATGGGTGACGAGGG
AAAGCTCTATGTTCCTTCCGAGCTAGTATCAGTATACCGTGAGAAGGTTG
TTCCAGTGGCCTCAATGTTGACCCCTAATCAGTTTGAAGCAGAACAGTTG
ACTGGTTTCAGGATTGGGAGTGAAGCAGATGGGAGGGAAGCTTGTAAGAT
TCTTCATGCTGCTGGACCTGCAAAGGTTGTGATCACAAGCATAAATATAG
ATGGCAATCTTTTCCTGATTGGCAGTCATCAGAAGGAAAAGGGT
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