CB290274

Overview
NameCB290274
Unique NameCB290274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2896 contig Csv1_Contig2896:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_BURP1 (Pyridoxamine kinase OS=Burkholderia pseudomallei (strain 1710b) GN=pdxY PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.750e-25
Identity = 58/180 (32.22%), Postives = 103/180 (57.22%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 696
            VLSIQSH + G+ GN +AVFP+Q LG +V P+++VQ SNH  Y  + G  ++  ++  L++G+ A   L     +L+G++GS +     +++V  +++ NPN  Y CDP MG  G +     +      ++  +A  + PN  E ++L G RI + A+   AC+++   GP  +++  ++
Sbjct:    4 VLSIQSHVIYGHAGNSAAVFPMQRLGVNVWPLNTVQLSNHMQYGHWAGSAIDAAKMEQLVDGIAAIGALKRCDAVLSGFLGSPAQARAAVEIVRTVKATNPNAWYFCDPAMGQTGGIRPEPGVEEFIVAELPELADGMAPNHSELQKLAGQRIETVAEAVAACRLIIRRGPQVILVKHLH 183          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_BURPS (Pyridoxamine kinase OS=Burkholderia pseudomallei GN=pdxY PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.546e-24
Identity = 58/180 (32.22%), Postives = 102/180 (56.67%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 696
            VLSIQSH + G+ GN +AVFP+Q LG +V P+++VQ SNH  Y  + G  ++  ++  L++G+ A   L     +L+G++GS +     +++V  +++ NPN  Y CDP MG  G +     +      ++  +A  + PN  E ++L G RI + A+   AC+ +   GP  +++  ++
Sbjct:    4 VLSIQSHVIYGHAGNSAAVFPMQRLGVNVWPLNTVQLSNHMQYGHWAGSAIDAAKMEQLVDGIAAIGALKRCDAVLSGFLGSPAQARAAVEIVRTVKATNPNAWYFCDPAMGQTGGIRPEPGVEEFIVAELPELADGMAPNHSELQKLAGQRIETVAEAVAACRSIIRRGPQVILVKHLH 183          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_SALTY (Pyridoxamine kinase OS=Salmonella typhimurium GN=pdxY PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 61/178 (34.27%), Postives = 104/178 (58.43%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ +   L +   +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L+   + +  D  +A + L A GP  V++
Sbjct:    4 ILAIQSHVVFGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIADIGQLAHCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRYALPASDIIAPNLIELEILSKHSVNNVDDAVQAARELIAQGPEIVLV 180          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_SALTI (Putative pyridoxamine kinase OS=Salmonella typhi GN=pdxY PE=5 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 61/178 (34.27%), Postives = 104/178 (58.43%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ +   L +   +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L+   + +  D  +A + L A GP  V++
Sbjct:    4 ILAIQSHVVFGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIADIGQLAHCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRYALPASDIIAPNLIELEILSKHSVNNVNDAVQAARELIAQGPEIVLV 180          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_SALPA (Pyridoxamine kinase OS=Salmonella paratyphi A GN=pdxY PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 61/178 (34.27%), Postives = 104/178 (58.43%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ +   L +   +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L+   + +  D  +A + L A GP  V++
Sbjct:    4 ILAIQSHVVFGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIADIGQLAHCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRYALPASDIIAPNLIELEILSKHSVNNVNDAVQAARELIAQGPEIVLV 180          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_SALCH (Pyridoxamine kinase OS=Salmonella choleraesuis GN=pdxY PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 61/178 (34.27%), Postives = 104/178 (58.43%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ +   L +   +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L+   + +  D  +A + L A GP  V++
Sbjct:    4 ILAIQSHVVFGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIADIGQLAHCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRYALPASDIIAPNLIELEILSKHSVNNVDDAVQAARELIAQGPEIVLV 180          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_BURMA (Pyridoxamine kinase OS=Burkholderia mallei GN=pdxY PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.264e-23
Identity = 57/180 (31.67%), Postives = 101/180 (56.11%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 696
            VLSIQSH + G+ GN +AVFP+Q LG +V P+++VQ SNH  Y  + G  ++  ++  L++G+ A   L     +L+G++GS +     +++V  +++ NPN  Y CDP MG  G +     +      ++  +A  + PN  E ++L G RI + A+   AC+ +    P  +++  ++
Sbjct:    4 VLSIQSHVIYGHAGNSAAVFPMQRLGVNVWPLNTVQLSNHMQYGHWAGSAIDAAKMEQLVDGIAAIGALKRCDAVLSGFLGSPAQARAAVEIVRTVKATNPNAWYFCDPAMGQTGGIRPEPGVEEFIVAELPELADGMAPNHSELQKLAGQRIETVAEAVAACRSIIRRSPQVILVKHLH 183          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_ERWCT (Pyridoxamine kinase OS=Erwinia carotovora subsp. atroseptica GN=pdxY PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.650e-23
Identity = 63/181 (34.81%), Postives = 106/181 (58.56%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYR-EKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 696
            +LSIQSH V G+ GN +A FP++ +G +V P+++VQFSNHT Y  + G V+    L ++++G+   + L     +L+GYIGS      IL +V ++++ NP+ +Y CDPVMG   K  + +  VS +  ++ +  A ++ PN  E E L G  + + A+  E  + L   GP  V++  ++
Sbjct:    4 ILSIQSHVVFGHAGNSAAEFPMRRMGANVWPLNTVQFSNHTQYGHWTGCVMPASHLTEVVQGIANIDKLKTCNAVLSGYIGSAEQGEHILGIVRQVKAANPDALYFCDPVMGTPEKGCIVAPGVSDFHCQQSLLAADIVAPNLPELELLGGRTVHNVAEAVETARALCEKGPKIVLVKHLS 184          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_SHISS (Pyridoxamine kinase OS=Shigella sonnei (strain Ss046) GN=pdxY PE=3 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.070e-22
Identity = 61/178 (34.27%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ A + L+    +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L    + +  +   A + L A GP  V++
Sbjct:    5 ILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLV 181          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_SHIBS (Pyridoxamine kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=pdxY PE=3 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.070e-22
Identity = 61/178 (34.27%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ A + L+    +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L    + +  +   A + L A GP  V++
Sbjct:    5 ILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLV 181          
The following BLAST results are available for this feature:
BLAST of CB290274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PDXY_BURP18.750e-2532.22Pyridoxamine kinase OS=Burkholderia pseudomallei (... [more]
PDXY_BURPS2.546e-2432.22Pyridoxamine kinase OS=Burkholderia pseudomallei G... [more]
PDXY_SALTY5.672e-2434.27Pyridoxamine kinase OS=Salmonella typhimurium GN=p... [more]
PDXY_SALTI5.672e-2434.27Putative pyridoxamine kinase OS=Salmonella typhi G... [more]
PDXY_SALPA5.672e-2434.27Pyridoxamine kinase OS=Salmonella paratyphi A GN=p... [more]
PDXY_SALCH5.672e-2434.27Pyridoxamine kinase OS=Salmonella choleraesuis GN=... [more]
PDXY_BURMA1.264e-2331.67Pyridoxamine kinase OS=Burkholderia mallei GN=pdxY... [more]
PDXY_ERWCT1.650e-2334.81Pyridoxamine kinase OS=Erwinia carotovora subsp. a... [more]
PDXY_SHISS1.070e-2234.27Pyridoxamine kinase OS=Shigella sonnei (strain Ss0... [more]
PDXY_SHIBS1.070e-2234.27Pyridoxamine kinase OS=Shigella boydii serotype 4 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290274 ID=CB290274; Name=CB290274; organism=Citrus sinensis; type=EST; length=744bp
GCCCTTAGGAGTTGCCGTCCTTGTTTGGGCACTTCCCGAAACCTCACGTT
TTCCGGCTTGATAGCAGCTTCCGATTGGATTTGTAGGAGGAGAAGCTCGA
GCATATCAGGAATGGCGCCTCCGATTCTCTCATTGGCTTTACCTTCGGAG
ACTGGTCGAGTTTTGAGCATACAGTCGCATACTGTTCAGGGGTATGTTGG
AAATAAATCAGCTGTCTTTCCTCTCCAACTACTGGGCTATGACGTGGATC
CAATCCATTCAGTACAGTTCTCAAACCACACAGGATACCCAACTTTCAAG
GGCCAAGTTTTGAATGGACAACAATTATGCGACTTAATAGAAGGACTGGA
AGCCAATAATCTATTGTACTATACTCATTTATTAACAGGTTATATTGGTT
CTGTTTCTTTTCTGAACACGATACTGCAAGTTGTTGAAAAGCTTCGCTCT
ATAAACCCAAATCTGATATACGTTTGTGATCCAGTGATGGGTGACGAGGG
AAAGCTCTATGTTCCTTCCGAGCTAGTATCAGTATACCGTGAGAAGGTTG
TTCCAGTGGCCTCAATGTTGACCCCTAATCAGTTTGAAGCAGAACAGTTG
ACTGGTTTCAGGATTGGGAGTGAAGCAGATGGGAGGGAAGCTTGTAAGAT
TCTTCATGCTGCTGGACCTGCAAAGGTTGTGATCACAAGCATAAATATAG
ATGGCAATCTTTTCCTGATTGGCAGTCATCAGAAGGAAAAGGGT
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