CB290275

Overview
NameCB290275
Unique NameCB290275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:828..1593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.143e-17
Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  489 HEVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 767
            H V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  228 HGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.550e-14
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  480 EVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 764
            E VV + GHD    A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  168 EYVVDATGHD----AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.247e-13
Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = -1
Query:  483 VVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 758
            V+ S GH        VKR    G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  163 VIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.629e-13
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = -1
Query:  480 VVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 758
            V+ S GH    GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  163 VIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.629e-13
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = -1
Query:  477 EVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 764
            + V+ + GHD    +   +++  +G+  ++PG K+     +E  +V  T +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  161 KAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.085e-13
Identity = 43/92 (46.74%), Postives = 52/92 (56.52%), Query Frame = -1
Query:  483 VVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 758
            V+ S GH    GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  163 VIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = -1
Query:  477 VVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 758
            VV S GH    GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  162 VVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 34/94 (36.17%), Postives = 55/94 (58.51%), Query Frame = -1
Query:  483 EVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 764
            + VV + GHD    +   +++  + ++  +PG K+    +AE+  V  T  V PG+   GM V E+ G PRMGP FGAM++SG++ A + +K L
Sbjct:  172 KAVVDATGHDAEVISVAARKIPELNIV--IPGEKSAYSETAEELTVENTGMVAPGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKRVAEIIIKDL 263          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.240e-12
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = -1
Query:  483 EVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 764
            + VV + GHD    A   +++  +G++  +PG ++     AE   V  T  V PG+ V GM V E+ G PRMGP FG+M++SG+K A   +K L
Sbjct:  171 KAVVDATGHDAEVVAVASRKIPELGIV--IPGERSAYSEMAEKLTVEQTGVVAPGLYVAGMSVTEVRGLPRMGPIFGSMVLSGKKVAEDIIKDL 262          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_METS5 (Putative thiazole biosynthetic enzyme OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2221 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.939e-12
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = -1
Query:  483 EVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 764
            + VV + GHD    +   +++  +G++  +PG K+     AE   V  + EV PG+   GM V EI   PRMGP FGAM++SG+K A   +K+L
Sbjct:  167 KAVVDATGHDAEVISVASRKIPELGIV--IPGEKSAYSEIAEQLTVEQSGEVAPGLYAAGMAVTEIKAIPRMGPIFGAMLLSGKKVAEDIIKNL 258          
The following BLAST results are available for this feature:
BLAST of CB290275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
THI4_YEAST4.143e-1751.58Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_AERPE9.550e-1445.26Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_PYRHO1.247e-1346.74Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU3.629e-1345.16Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAR3.629e-1337.50Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_PYRAB8.085e-1346.74Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO3.072e-1243.62Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_SULTO4.012e-1236.17Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULAC5.240e-1238.30Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METS58.939e-1238.30Putative thiazole biosynthetic enzyme OS=Metallosp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290275 ID=CB290275; Name=CB290275; organism=Citrus sinensis; type=EST; length=767bp
CCCACTANTTTTTTTTTCATTTTTTTGATCTTAATCACATCAGCACTGTC
CCATTGGGCTGATGCCTCAAGTTATAAACATACAAAGCAAAGAAAAGGGA
ACAGCCCAAGGGCAGTCTTACACATAATACAGATAACAAGGACTAGATAC
GCAACTGCAAATTCACCCCCGAAAAACTCACAACGGTTTCTTACAAGAGG
AGAAAGAAATTAAAATTAAAGGTTGCATGATGGACCGGAAACAAACACTT
TATTCACAAAACCTCACAACATCATCTCATTATTCGCATCAACCATCCAT
CACAACCACCTAAATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCA
CACAGCTGATGAGTGATGATGCCTGTTATTATCAAATTAACCATCAGCAG
TCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTCAGGGTGAACACCTCCC
ACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAA
ATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCA
TTCTAGGAGCACCATCAATCTCGGCAACTTCCATGCCGGTAACTATCATA
CCAGGCACAACCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTT
CATGTCCAGTGCCTTCATTCCAGGCACTTCCTCAATCATTCCGATACTCT
TCAACCTCTTTACTCCAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAG
CTCACAACCACCTCGTG
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