CB290275

Overview
NameCB290275
Unique NameCB290275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:828..1593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 41/100 (41.00%), Postives = 53/100 (53.00%), Query Frame = -1
Query:  477 VVVSSCGHDGPFGATGVKRLKSI-----GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 761
            VV+   GHD        K++        G+I E P   AL     E  +V  TREV PG+IV GM    +   PRMGP FG M++SG+KAA +AL+ L Q
Sbjct:  164 VVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = -1
Query:  477 EVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 764
            ++VV S GHD          G   A G++     + GM             + PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  174 DLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_METVS (Putative thiazole biosynthetic enzyme OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0663 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = -1
Query:  477 VVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 758
            V+ S GHD    +T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A L L+ L +
Sbjct:  170 VIDSTGHDASVVSTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLFVCGMTANAYHAGYRMGAIFGGMYLSGKKCAELILEKLNK 261          
BLAST of CB290275 vs. ExPASy Swiss-Prot
Match: THI4_SULSO (Putative thiazole biosynthetic enzyme OS=Sulfolobus solfataricus GN=SSO0436 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = -1
Query:  483 EVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 764
            + VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+  TGM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  169 KAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYATGMAVTEVKGLPRMGPIFGAMVLSGKAVAGEITKDL 260          
The following BLAST results are available for this feature:
BLAST of CB290275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
THI4_METTP1.991e-1141.00Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_HALWD1.991e-1135.29Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_METVS5.794e-1138.30Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULSO9.883e-1137.23Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290275 ID=CB290275; Name=CB290275; organism=Citrus sinensis; type=EST; length=767bp
CCCACTANTTTTTTTTTCATTTTTTTGATCTTAATCACATCAGCACTGTC
CCATTGGGCTGATGCCTCAAGTTATAAACATACAAAGCAAAGAAAAGGGA
ACAGCCCAAGGGCAGTCTTACACATAATACAGATAACAAGGACTAGATAC
GCAACTGCAAATTCACCCCCGAAAAACTCACAACGGTTTCTTACAAGAGG
AGAAAGAAATTAAAATTAAAGGTTGCATGATGGACCGGAAACAAACACTT
TATTCACAAAACCTCACAACATCATCTCATTATTCGCATCAACCATCCAT
CACAACCACCTAAATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCA
CACAGCTGATGAGTGATGATGCCTGTTATTATCAAATTAACCATCAGCAG
TCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTCAGGGTGAACACCTCCC
ACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAA
ATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCA
TTCTAGGAGCACCATCAATCTCGGCAACTTCCATGCCGGTAACTATCATA
CCAGGCACAACCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTT
CATGTCCAGTGCCTTCATTCCAGGCACTTCCTCAATCATTCCGATACTCT
TCAACCTCTTTACTCCAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAG
CTCACAACCACCTCGTG
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