CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.382e-26
Identity = 64/163 (39.26%), Postives = 99/163 (60.74%), Query Frame = -2
Query:  366 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 854
            DSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G IP+ ETSAK   NVE+AF  +A    K
Sbjct:   16 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMAAEIKK 171          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.417e-26
Identity = 61/173 (35.26%), Postives = 103/173 (59.54%), Query Frame = -2
Query:  348 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD----NFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 854
            D  VGKTS++++ +  KF+ +YK+TIGADFL+K     D +  +Q+WDTAGQE++  L  AF+R +D  +LV+D+++  SF NLN W ++F  ++   +PD      P ++L NK D     +R V + +   WC       Y+E SAK  IN++E+   + +  ++  ++ +
Sbjct:   17 DVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQF--KSKSINPDGTEKQLPILLLANKSD---SLTRAVDQSEINQWCTDHKVNLYYEVSAKSSINIKESILKLVEVIIEQDKDSD 184          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 118.627 bits (296), Expect = 4.417e-26
Identity = 63/170 (37.06%), Postives = 105/170 (61.76%), Query Frame = -2
Query:  345 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 854
            DSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K N+ + ETSA +  NVEEAF+ I     +   +++I
Sbjct:   19 DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 4.417e-26
Identity = 63/170 (37.06%), Postives = 105/170 (61.76%), Query Frame = -2
Query:  345 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 854
            DSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K N+ + ETSA +  NVEEAF+ I     +   +++I
Sbjct:   19 DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 118.627 bits (296), Expect = 4.417e-26
Identity = 63/170 (37.06%), Postives = 105/170 (61.76%), Query Frame = -2
Query:  345 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 854
            DSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K N+ + ETSA +  NVEEAF+ I     +   +++I
Sbjct:   19 DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 4.417e-26
Identity = 63/170 (37.06%), Postives = 105/170 (61.76%), Query Frame = -2
Query:  345 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 854
            DSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K N+ + ETSA +  NVEEAF+ I     +   +++I
Sbjct:   19 DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.417e-26
Identity = 67/163 (41.10%), Postives = 99/163 (60.74%), Query Frame = -2
Query:  366 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 854
            DSGVGK+ L+ ++ +  F+  + ATIG DF  + ++ E +   LQIWDTAGQERF+++  A+YRGA   +LVYDV   KSF ++ NW       AS    D+   +++GNK D+     +VV   + ++  A +  I + ETSAK  +NVEEAF  +AK+  K
Sbjct:   23 DSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHAS----DSVNKMLIGNKCDMT--EKKVVDSSRGKS-LADEYGIKFLETSAKNSVNVEEAFIGLAKDIKK 178          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.417e-26
Identity = 69/197 (35.03%), Postives = 108/197 (54.82%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA--------KNALKSGEEEEIYLPDTIDVGNSSQPRSSGC 854
            DSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G +P+ ETSAK   NVE+AF  +A          A   GE   + +  T       +P S GC
Sbjct:   16 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDNTTAKEFADSLG-VPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDST-----PVKPASGGC 200          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.768e-26
Identity = 71/163 (43.56%), Postives = 99/163 (60.74%), Query Frame = -2
Query:  366 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 854
            DSG GK+SL+ ++ +  +S  Y +TIG DF  K V+ ++    LQIWDTAGQERF+++   +YRGA   + VYDV +  SFD++    E +L         N   +++GNKID+    SRVVS  +A+   A + N+ Y E SAK   NVE+AF  IAK ALK
Sbjct:   15 DSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHIT---ETWLQDIDKYATSNVCKLLIGNKIDL--AESRVVSADEAK-HVAEQNNMNYIEASAKTDSNVEKAFTTIAK-ALK 170          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.768e-26
Identity = 63/163 (38.65%), Postives = 97/163 (59.51%), Query Frame = -2
Query:  366 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 854
            DSGVGK+ L+ ++ +  ++  Y +TIG DF  + +  + ++  LQIWDTAGQERF+++  ++YRGA   ++VYDV    SF+N+  W +E    A     D+   +++GNK D+     ++V    AR +  S G IP+ ETSAK   NVE+AF  +A    K
Sbjct:   16 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYAC----DSVTRLLVGNKCDLI--EKKIVDTSTAREYADSVG-IPFLETSAKSSANVEQAFMIMASEIKK 171          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1_DISOM3.382e-2639.26Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RB32D_DICDI4.417e-2635.26Ras-related protein Rab-32D OS=Dictyostelium disco... [more]
RB11B_RAT4.417e-2637.06Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE4.417e-2637.06Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN4.417e-2637.06Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN4.417e-2637.06Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RAB8B_DICDI4.417e-2641.10Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB1B_MOUSE4.417e-2635.03Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1_THEPA5.768e-2643.56Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB1B_DICDI5.768e-2638.65Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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