CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.285e-25
Identity = 65/164 (39.63%), Postives = 98/164 (59.76%), Query Frame = -2
Query:  363 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 854
            +S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS        + GNK D+   + R+V  ++A+A+ A   ++ + ETSAK  +NV + F  IAK   KS
Sbjct:   28 ESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKADL--ASKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKS 184          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.285e-25
Identity = 69/197 (35.03%), Postives = 107/197 (54.31%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA--------KNALKSGEEEEIYLPDTIDVGNSSQPRSSGC 854
            DSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G IP+ ETSAK   NVE+AF  +A          A   GE   + +  T       +P   GC
Sbjct:   16 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDST-----PVKPAGGGC 200          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.285e-25
Identity = 63/163 (38.65%), Postives = 98/163 (60.12%), Query Frame = -2
Query:  366 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 854
            DSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G IP+ ETSAK   NVE+AF  +A    K
Sbjct:   16 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMAAEIKK 171          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.678e-25
Identity = 68/183 (37.16%), Postives = 105/183 (57.38%), Query Frame = -2
Query:  315 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK---SGEEEEIYLPDTIDVGN 854
            DSGVGK+ L+ ++    F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +L+YDV   KSFDN+  W       AS    +N   +++GNK D +  + R VS ++ +A  A +  + + E SAK  +NV+EAF  +A+   K     E E     + +D+GN
Sbjct:   17 DSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS----ENVYKILIGNKCDCE--DQRQVSFEQGQA-LADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVDLGN 192          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.678e-25
Identity = 68/183 (37.16%), Postives = 105/183 (57.38%), Query Frame = -2
Query:  309 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTID-VGNSS 854
            DS VGK+ L+ ++   +F+   KATIG +F T+ +  + R    QIWDTAGQER++++  A+YRGA   +LVYD+   +SFD++  W EE    A      N   +++GNK D+  G  RVV  + A+ + A + N+ + ETSA E  NVE AF  +     +   ++ +   + +D  GNSS
Sbjct:   26 DSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHAD----KNIVIMLIGNKSDL--GTLRVVPTEDAKEF-AERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSS 201          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.678e-25
Identity = 63/169 (37.28%), Postives = 94/169 (55.62%), Query Frame = -2
Query:  366 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS------KGNIPYFETSAKEGINVEEAFQCIAKNALK 854
            DS VGKTSL   YVN ++      +IG D+  KE++ E++   L +WDT GQERFQ+    ++RGA+C  L +D+++ +SF NL  W +E +         N PFV++G K D+     + +S+ +   WC +         + YFETSAK   NV E +   AK AL+
Sbjct:   15 DSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCY----GNIPFVLVGTKSDIP-RTDKSISKARIEQWCKNIEDQGIIDKVHYFETSAKLSQNVTELYNVAAKLALE 178          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.678e-25
Identity = 63/163 (38.65%), Postives = 98/163 (60.12%), Query Frame = -2
Query:  366 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 854
            DSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV    SF+N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A    K
Sbjct:   19 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK 174          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.678e-25
Identity = 62/158 (39.24%), Postives = 97/158 (61.39%), Query Frame = -2
Query:  381 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 854
            DSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    +N   +++GNK D+     +VV    A+ +    G IP+ ETSAK   NVE+AF  +A
Sbjct:   19 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDFTTAKEYADQLG-IPFLETSAKNATNVEQAFMTMA 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.192e-25
Identity = 72/201 (35.82%), Postives = 113/201 (56.22%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ--------CIAKNALKSGE-EEEIYLP---DTIDVGNSSQPRSSGC 854
            DSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +L YD+   ++FDN+  W  E           N   ++ GNK D+   + R VSE+  +A    +G + + ETSA E +NV++AFQ         I+K AL + E      LP    TI+V ++S     GC
Sbjct:   20 DSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLREL----RDHRDSNIVIILAGNKSDLK--HLRAVSEQDDQALVKKEG-LSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVKRGC 213          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.192e-25
Identity = 71/194 (36.60%), Postives = 111/194 (57.22%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA----KNALKSGEEEEIYLPDTIDV-GNSSQPRSSGC 854
            DS VGK+ L+ ++ +  + + Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYD   M+SF+N+  W  E    A+    ++   +++GNK D+    S+VVS +  RA  A +  IP+ ETSAK+ INVE+AF  IA    K         +   P T+ + G   Q  + GC
Sbjct:   16 DSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYAN----ESVCKLLIGNKNDM--VESKVVSTETGRA-LADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGC 202          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5B_CHICK1.285e-2539.63Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB1B_MACFA1.285e-2535.03Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_BOVIN1.285e-2538.65Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
YPT2_SCHPO1.678e-2537.16GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RGP1_ORYSJ1.678e-2537.16Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RABL_DICDI1.678e-2537.28Ras-related protein RabL OS=Dictyostelium discoide... [more]
RAB1A_PIG1.678e-2538.65Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_LYMST1.678e-2539.24Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RB11A_TOBAC2.192e-2535.82Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RABD1_ARATH2.192e-2536.60Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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