CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.192e-25
Identity = 62/163 (38.04%), Postives = 98/163 (60.12%), Query Frame = -2
Query:  366 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 854
            DSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    +N   +++GNK D+     +VV    A+ +  S G +P+ ETSAK   NVE+AF  +A    K
Sbjct:   16 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKSDLT--TKKVVDNTTAKEFADSLG-VPFLETSAKNATNVEQAFMTMAAEIKK 171          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.863e-25
Identity = 64/163 (39.26%), Postives = 97/163 (59.51%), Query Frame = -2
Query:  366 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 854
            DSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E    A     +N   +++GNK D+     RVVS   A+ +  S G I + ETSAK   NVE+AF  +A    K
Sbjct:   16 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYAC----ENVNKLLVGNKSDLTA--KRVVSTDAAKEFAESLG-IEFLETSAKNAANVEKAFMMMAAQIKK 171          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.863e-25
Identity = 73/197 (37.06%), Postives = 111/197 (56.35%), Query Frame = -2
Query:  285 SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK---NALKSGEEEEIYLPDTIDVGNSS-----QPRSSGCE 851
            +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQERF+S+  ++YRGA   +LVYD+ S ++++ L NW  +    ASP    N   ++ GNK D+D    R V+  +A  + A +  + + ETSA  G NVEEAF   A+   N ++SGE +   +   I  G++S     QPR S  +
Sbjct:   17 AGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASP----NIVIILCGNKKDLDA--DREVTFLEASRF-AQENELMFLETSALTGENVEEAFLKCARSIPNKIESGELDPERMGSGIQYGDASLRQIRQPRGSAAQ 206          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.863e-25
Identity = 69/194 (35.57%), Postives = 112/194 (57.73%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA---KNALKSGEEEEIYLPDTIDVGNSS--QPRSSGC 854
            DSGVGK+ L+ ++ +  +S  + +TIG DF  + ++   +   LQIWDTAGQERF+++  ++YRGA   ++VYDV    +F+N+  W +E    A     +N   +++GNK D+     +VV    A+A+ A    IP+ ETSAK+  NVE+AF  +A   KN L + +  +    + +  G+S+   P+S  C
Sbjct:   16 DSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFAC----ENVNKLLVGNKSDLVA--KKVVDFNTAKAF-ADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 115.931 bits (289), Expect = 2.863e-25
Identity = 62/157 (39.49%), Postives = 97/157 (61.78%), Query Frame = -2
Query:  384 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 854
            DSGVGK+++++++   +F  + K+TIG +F T+  Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   ++FDN+  W  E    A      N   ++ GNK D++  + R V+E+  ++  A K  + + ETSA E  NVE+AFQ I
Sbjct:   20 DSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLN--HLRSVAEEDGQS-LAEKEGLSFLETSALEATNVEKAFQTI 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPT5_SCHPO (GTP-binding protein ypt5 OS=Schizosaccharomyces pombe GN=ypt5 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.739e-25
Identity = 64/160 (40.00%), Postives = 97/160 (60.62%), Query Frame = -2
Query:  378 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT-LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 854
            DS VGK+SL+ ++V  +F +  ++TIGA FLT+ +  ++     L+IWDTAGQER++SL   +YR A+C ++VYD+    S +   +W +E   QA    P+     + GNK+D+     R V +  A A+ A++ N+ +FETSAK   NV E F  IAK
Sbjct:   22 DSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQA----PEGIVIALAGNKLDL-AQERRAVEKADAEAY-AAEANLLFFETSAKTAENVNELFTAIAK 175          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB32A_DICDI (Ras-related protein Rab-32A OS=Dictyostelium discoideum GN=rab32A PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.739e-25
Identity = 66/196 (33.67%), Postives = 109/196 (55.61%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS-PSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTI---DVGNSSQPRSSGCEC 854
            D G GKTS++ ++V+  FS  YK+TIG DF  K + ++ +    LQ+WD AGQERF S+   +Y+ A   ++ +DV  M +F+ +  W+ +   + +  +D    P V+L NK D+ G ++ + +      +C   G I +FETSAKE +N+E+A + +  + LK+       +  TI   D+    QP S+G  C
Sbjct:   23 DIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDPKTEVRLQLWDIAGQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLANKCDL-GKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDVRRNQPIEGTIQPGDLNKQPQPTSTGPSC 217          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.739e-25
Identity = 61/157 (38.85%), Postives = 98/157 (62.42%), Query Frame = -2
Query:  384 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 854
            DSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K  + + ETSA +  NVE AFQ I
Sbjct:   19 DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 168          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.739e-25
Identity = 61/157 (38.85%), Postives = 98/157 (62.42%), Query Frame = -2
Query:  384 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 854
            DSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K  + + ETSA +  NVE AFQ I
Sbjct:   19 DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 168          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.739e-25
Identity = 61/157 (38.85%), Postives = 98/157 (62.42%), Query Frame = -2
Query:  384 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 854
            DSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K  + + ETSA +  NVE AFQ I
Sbjct:   19 DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 168          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_RAT2.192e-2538.04Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
YPT1_PHYIN2.863e-2539.26Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB4B_DANRE2.863e-2537.06Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB1A_DICDI2.863e-2535.57Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAA2C_ARATH2.863e-2539.49Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
YPT5_SCHPO3.739e-2540.00GTP-binding protein ypt5 OS=Schizosaccharomyces po... [more]
RB32A_DICDI3.739e-2533.67Ras-related protein Rab-32A OS=Dictyostelium disco... [more]
RB11A_RAT3.739e-2538.85Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT3.739e-2538.85Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB3.739e-2538.85Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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