CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.856e-24
Identity = 66/195 (33.85%), Postives = 106/195 (54.36%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDV--GNSSQPRSS--GCEC 854
            +  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQERF+SL  ++ R +   V+VYD+ ++ SF   + W ++   +       +   +++GNK D+       + E + R   A + ++ + ETSAK G NV++ F+ +A         +E      ID+      +P +S  GC C
Sbjct:   21 EQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG----SDVIIMLVGNKTDLADKRQITIEEGEQR---AKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC 208          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 1.856e-24
Identity = 66/195 (33.85%), Postives = 104/195 (53.33%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDV---GNSSQP-RSSGCEC 854
            +  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQERF+SL  ++ R +   V+VYD+ ++ SF     W ++   +       +   +++GNK D+       + E + +   A + N+ + ETSAK G NV++ F+ +A         ++    D ID+       QP    GC C
Sbjct:   21 EQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVGNKTDLADKRQVSIEEGERK---AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVNEGGCSC 208          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.856e-24
Identity = 75/194 (38.66%), Postives = 104/194 (53.61%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK----NALKSGEEEEIYLPDTIDVGNSSQPRSSGC 854
            DSGVGKT  + Q+ +  F S  + AT+G D   K V  +     LQIWDTAGQERF+S+  A+YR A   +L+YD+ +  SFDN+  W  E    A      +   ++LGNK DV   + RV+  +         G +P+ ETSAK G+NVE AF  IAK     A +  +E    + D ++   S + RSS C
Sbjct:   37 DSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQ----RDVVIMLLGNKADV--SSERVIRSEDGETLAREYG-VPFMETSAKTGMNVELAFLAIAKELKYRAGRQPDEPSFQIRDYVE---SQKKRSSCC 220          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.423e-24
Identity = 62/175 (35.43%), Postives = 106/175 (60.57%), Query Frame = -2
Query:  354 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF--------QCIAKNALKSGEE 854
            DSGVGK++L++++   +F+ + K+TIG +F TK +  ++++   QIWDTAGQER++++  A+YRGA   +LVYDV    +++N+  W +E      P    N   +++GNK D+   +   VS  +A+   A +  + + ETSA E  NVE AF        + ++K A+++G+E
Sbjct:   21 DSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDP----NIVVMLIGNKSDL--RHLVAVSTDEAKG-LAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDE 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.423e-24
Identity = 62/175 (35.43%), Postives = 105/175 (60.00%), Query Frame = -2
Query:  354 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF--------QCIAKNALKSGEE 854
            DSGVGK++L++++   +FS + K+TIG +F T+ +Q + ++   QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N+  W +E      P    N   +++GNK D+    +    E KA    A + ++ + ETSA E  NVE AF        + ++K ++++G++
Sbjct:   22 DSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDP----NIVVMLVGNKSDLRHLVAVQTDEGKA---FAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDD 189          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.423e-24
Identity = 68/182 (37.36%), Postives = 109/182 (59.89%), Query Frame = -2
Query:  309 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSS 854
            DSGVGKT ++ ++ +  F+  + +TI  DF  K V+ + +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W       A+    ++   ++L NK D+D  + RVV + K     A +  I +FETSAK  IN+E+AF  + ++ L+    +E   P++ +V  SS
Sbjct:   17 DSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHAN----EDVERMLLRNKCDMD--HKRVVPKGKGEQ-IAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKE---PNSENVDISS 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB38_MOUSE (Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.165e-24
Identity = 60/163 (36.81%), Postives = 98/163 (60.12%), Query Frame = -2
Query:  369 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 854
            D GVGKTS++ +YV++ FS+ Y+ATIG DF  K + ++ + +  LQ+WD AGQERF ++   +YR A    +V+DV    +F+ +  W+ +   + +  +      V+L NK D  G +  + +  K   +C   G + +FETSAKE IN++EA +C+ K+ L
Sbjct:   17 DLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHIL 178          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 3.165e-24
Identity = 73/191 (38.22%), Postives = 103/191 (53.93%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSGEEEEIYLPDTIDVGNSSQPRSSGC 854
            D+GVGKT  + Q+ +  F S  + AT+G DF  K V  +     LQIWDTAGQERF+S+  A+YR A   +L+YD+ +  SFDN+  W  E    A      +   ++LGNK D+   + RV+  +         G +P+ ETSAK G+NVE AF  IAK    ++G + +       D   S + RSS C
Sbjct:   37 DTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQ----RDVVIMLLGNKADM--SSERVIRSEDGETLAREYG-VPFLETSAKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCC 220          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 4.134e-24
Identity = 59/182 (32.42%), Postives = 109/182 (59.89%), Query Frame = -2
Query:  309 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSS 854
            DSGVGK++L++++   +F+   K+TIG +F T+ ++ + +    QIWDTAGQER++++  A+YRGA   ++VYD++   S++N N+W  E    A     DN    ++GNK D+   + R V  ++++ + A +  + + ETSA    NV++AF+ +     +   + ++ L D+   GN++
Sbjct:   21 DSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNKSDL--AHLRAVPTEESKTF-AQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNAN 195          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.134e-24
Identity = 66/194 (34.02%), Postives = 106/194 (54.64%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA---KNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 854
            DSGVGK+ L+ ++ +  ++  Y +TIG DF  +  + E +   LQIWDTAGQERF+++  ++YRGA   ++VYDV    SF+N+  W +E    A     +    +++GNK D+   + +VV    A+ + A   NIP+ ETSAK+  NVE+AF  ++   K  + +          ++ VG  +    S   C
Sbjct:   16 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYA----VEGVNRLLVGNKSDM--VDKKVVEYSVAKEF-ADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNC 202          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB6B_BOVIN1.856e-2433.85Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ... [more]
RAB6A_MOUSE1.856e-2433.85Ras-related protein Rab-6A OS=Mus musculus GN=Rab6... [more]
RAB37_MOUSE1.856e-2438.66Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
YPT3_NICPL2.423e-2435.43Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RIC2_ORYSJ2.423e-2435.43Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAB10_RAT2.423e-2437.36Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB38_MOUSE3.165e-2436.81Ras-related protein Rab-38 OS=Mus musculus GN=Rab3... [more]
RAB37_HUMAN3.165e-2438.22Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
YPT31_YEAST4.134e-2432.42GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
YPT1_SCHPO4.134e-2434.02GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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