CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.134e-24
Identity = 70/197 (35.53%), Postives = 107/197 (54.31%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA---------KNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            D  VGKTS++ +++  KF   Y+ TIG DFL+K +  EDR   LQ+WDTAGQERF+SL  ++ R +   ++VYDV++ ++F N + W E+   +   S   N   V++GNK D+       +SE + +     +  + + ETSAKE  N++  F+ IA           A KS +  ++ L  T    NSSQ    G
Sbjct:   17 DQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQS---NVIIVLVGNKTDLVEKRQVSISEGEDK---GKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLATKSDDMVDVNLKTT---SNSSQGEQQG 204          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.134e-24
Identity = 65/168 (38.69%), Postives = 92/168 (54.76%), Query Frame = -2
Query:  354 DSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 854
            DSGVGKTS + +Y   +F    + AT+G     K V  +     LQIWDTAGQERF+S+  A+YR A   +L+YDV +  ++DN+  W  E    A     ++   V++GNK D  G   +V  E   R     + N+P+ ETSAK G+NVE +F  +A+     G E
Sbjct:  198 DSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQ----EDVVIVLIGNKADCSGSERQVKREDGER--LGREHNVPFMETSAKTGLNVELSFTAVARQLKSRGYE 359          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.134e-24
Identity = 67/160 (41.88%), Postives = 92/160 (57.50%), Query Frame = -2
Query:  378 DSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 854
            DSGVGKT L+ ++ +  F +  + +T+G DF  K V  +     LQIWDTAGQERF+S+  A+YR A   +L+YDV +  SFD++  W  E    A     D+   ++LGNK  VD    R V  + A       G +P+ ETSAK G+NV+ AF  IAK
Sbjct:   71 DSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQ----DDVVLMLLGNK--VDSAQERAVKREDAEKLAKDYG-LPFMETSAKTGLNVDLAFTAIAK 223          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.399e-24
Identity = 70/202 (34.65%), Postives = 107/202 (52.97%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV--DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA-KNALKSGEEEEIYLPD--------TIDVGNSSQPRSSGCEC 854
            ++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAGQERF SL   +YR A   ++VYDV   +SF    +W +E   QAS     +    ++GNKID+  +GG  +V  E+  +   A +  + +FETSAK G NV + F  I  K  LK+ EE+     +         ++  N     +S C C
Sbjct:   15 EAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKIDMLQEGGERKVAREEGEK--LAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLKTAEEQNSASNERESNNQRVDLNAANDGTSANSACSC 210          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.399e-24
Identity = 61/154 (39.61%), Postives = 89/154 (57.79%), Query Frame = -2
Query:  393 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 854
            D+GVGK+S++ ++V   F      TIGA F+TK VQ+++ L    IWDTAGQERF++L   +YRG+   ++VYD+   ++F  L NW +E         P N    + GNK D+   + R V E+ A+ +  S   I + ETSAK  IN+ E F
Sbjct:   13 DTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKEL----RQHGPPNIVVAIAGNKCDLI--DVREVMERDAKDYADSIHAI-FVETSAKNAININELF 159          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.399e-24
Identity = 67/194 (34.54%), Postives = 108/194 (55.67%), Query Frame = -2
Query:  282 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL----PDTIDVGNSSQ--PRSSGCEC 845
            VGK+SL+ Q+  K+FS +   TIG +F T+ +  +     L+IWDTAGQE F+S+   +YRGA   +L YD+   +SF  L+ W +E    +SP    N    ++GNK D    + RV++ ++  A  A + +I +FETSAK+  +VE  F  ++K  L   ++  + +    P +I +G  +Q  P+    EC
Sbjct:   16 VGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSP----NIVIALIGNKCDCK--DKRVITTEEG-AKNAKENDILFFETSAKDYESVESVFDGVSKKVLSLIKQGTLTVVNKKPQSIQLGAPTQETPKKPKSEC 202          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.399e-24
Identity = 71/204 (34.80%), Postives = 110/204 (53.92%), Query Frame = -2
Query:  294 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK-----------------NALKSGEEEEIYLPDTIDVGNSSQPRSS 854
            D+GVGK+ L+ Q+ +K+F   +  TIG +F  + V  + +   LQIWDTAGQE F+S+  ++YRGA   +LVYD+   ++F++L +W E+    A      N   +++GNK D++  + R V  ++  A+    G I + ETSAK   NVEEAF   AK                 N +K G ++ I    +  VG S+  R+S
Sbjct:   14 DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED----ARQHSSSNMVIMLIGNKSDLE--SRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSI----STSVGPSASQRNS 206          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.051e-24
Identity = 62/174 (35.63%), Postives = 104/174 (59.77%), Query Frame = -2
Query:  357 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF--------QCIAKNALKSGE 854
            DSGVGK++L++++   +F+ + K+TIG +F TK +  + ++   QIWDTAGQER++++  A+YRGA   +LVYDV    +F+    W +E      P    N   +++GNK D+   +   VS +  +A+ A K ++ + ETSA E  NVE AF        + ++K A+++G+
Sbjct:   21 DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDP----NIVVMLIGNKSDL--RHLVTVSTEDGKAF-AEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGD 187          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.051e-24
Identity = 66/167 (39.52%), Postives = 97/167 (58.08%), Query Frame = -2
Query:  354 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 854
            DSGVGK+S++ ++    F+  Y +TIG DF  K V  E +   LQIWDTAGQERF+    + YRG    ++VYDV   +SF+N+  W +E    A     DN   +++GNK D+   + +VV    A+ + A   +I + ETSAK+ IN+E+AF  + K  +   EE
Sbjct:   16 DSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYAR----DNVIKMIIGNKSDMI--SQKVVDPFLAQEF-ADSLDITFKETSAKQAINIEDAFISLVKLCIDRIEE 175          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.051e-24
Identity = 66/195 (33.85%), Postives = 104/195 (53.33%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA-------KNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            D  VGKTS++ +++   F   Y+ATIG DFL+K +  EDR   LQ+WDTAGQERF+SL  ++ R +   ++VYD+ +  SF N   W E+   +      +N   +++GNK D+       + E +A+   A + +I + ETSAK G N++  F+ +A        N++   + E I   D  D G  +     G
Sbjct:   14 DQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERG----NNVVIMLVGNKTDLADKRQVSIEEGEAK---AKEYDIMFTETSAKAGFNIKALFRKVASALPGIDSNSMTKNQHEIISEVDITDGGKPALKEGDG 201          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBH1C_ARATH4.134e-2435.53Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]
RAB26_DROME4.134e-2438.69Ras-related protein Rab-26 OS=Drosophila melanogas... [more]
RAB26_BOVIN4.134e-2441.88Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
VPS21_YEAST5.399e-2434.65Vacuolar protein sorting-associated protein 21 OS=... [more]
RB22A_HUMAN5.399e-2439.61Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RABQ_DICDI5.399e-2434.54Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB2B_HUMAN5.399e-2434.80Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RB11E_LOTJA7.051e-2435.63Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RABA_DICDI7.051e-2439.52Ras-related protein RabA OS=Dictyostelium discoide... [more]
RAB6_DICDI7.051e-2433.85Ras-related protein Rab-6 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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