CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RRAS_MOUSE (Ras-related protein R-Ras OS=Mus musculus GN=Rras PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.869e-17
Identity = 63/189 (33.33%), Postives = 101/189 (53.44%), Query Frame = -2
Query:  282 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 848
            GVGK++L  Q++   F + Y  TI  D  TK    +     L I DTAGQE F ++   + R  +  +LV+ +N  +SF+ +     + L      D D+FP V++GNK D++  N R V   +A ++ AS  ++ YFE SAK  +NV+EAF+ + +   K  E+E   LP +    ++ + +  GC C
Sbjct:   39 GVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICTVDGIPARLDILDTAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEVGKLFTQIL---RVKDRDDFPIVLVGNKADLE--NQRQVLRSEASSFSASH-HMTYFEASAKLRLNVDEAFEQLVRAVRKYQEQE---LPPS--PPSAPRKKDGGCPC 215          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB33B_MOUSE (Ras-related protein Rab-33B OS=Mus musculus GN=Rab33b PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.869e-17
Identity = 61/168 (36.31%), Postives = 89/168 (52.98%), Query Frame = -2
Query:  363 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK---EGINVEEAFQCIAKNALKS 854
            DS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDTAGQERF +S+   +YR     V VYD+ +M SF +L  W EE       +D    P +++GNK D+    S +          A   ++P FETSAK   +  +VE  F  +A + LKS
Sbjct:   41 DSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILVGNKCDL---RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA-HKLKS 201          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB33B_CHICK (Ras-related protein Rab-33B OS=Gallus gallus GN=RAB33B PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.869e-17
Identity = 62/168 (36.90%), Postives = 93/168 (55.36%), Query Frame = -2
Query:  363 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK---EGINVEEAFQCIAKNALKS 854
            DS VGKT L  ++   +F  + +ATIG DF  + V  +     +Q+WDTAGQERF +S+   +YR     V VYD+ ++ SF +L +W EE       +D    P +++GNK D+   N+  V    A+ + A   ++P FETSAK   +  +VE  F  +A + LKS
Sbjct:   39 DSNVGKTCLTYRFCAGRFPQRTEATIGVDFRERAVTIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNLASFHSLPSWIEECKQHLLTND---IPRILVGNKCDL--RNAIQVPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLA-HKLKS 199          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAS_BOTFU (Ras-like protein OS=Botryotinia fuckeliana GN=ras1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.869e-17
Identity = 60/199 (30.15%), Postives = 98/199 (49.25%), Query Frame = -2
Query:  282 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQP----------RSSGCEC 848
            GVGK+ L  Q +   F ++Y  TI  D   K+   ++ +  L + DTAGQE + ++   + R  +  +LVY + S +SF+ +  ++++ L      D D FP +V+GNK D++G   R VS+++ +   A      + ETSAK  INV+ AF  I +   +  +E   Y        N+  P          + SGC C
Sbjct:   18 GVGKSCLTIQLIQSHFVDEYDPTI-EDSYRKQCVIDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQIL---RVKDKDYFPIIVVGNKCDLEG--ERQVSKQEGQQ-LADDFGCKFIETSAKSRINVDNAFYDIVREIRRYNKEMAGYTAGGASGANNGGPQGKMEVSEGEKESGCCC 209          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASW_DICDI (Ras-like protein rasW OS=Dictyostelium discoideum GN=rasW PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.869e-17
Identity = 54/154 (35.06%), Postives = 81/154 (52.60%), Query Frame = -2
Query:  393 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 854
            D GVGKT++  Q+++  F   Y  TI  D   K+   +D+++ L I DTAGQ+   ++   + R  +  +LVY V S  SFD +  +RE+ +      D D+ P +++GNKID+D        E K  A C     + + E SAK   NVEE F
Sbjct:   17 DGGVGKTAVTIQFISNHFVYYYDPTI-EDSYRKQCLVDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQIQFFREQII---RVLDSDDVPIMMIGNKIDLDDERQVTFQEGKDLARCL---GMSFMEVSAKNRTNVEEVF 163          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASH_MSVHA (Transforming protein p29 OS=Harvey murine sarcoma virus GN=H-RAS PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.869e-17
Identity = 60/189 (31.75%), Postives = 98/189 (51.85%), Query Frame = -2
Query:  282 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DT GQE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+ G   R V  ++A+    S G IPY ETSAK    VE+AF  + +  ++  +  ++  PD       S P    C+C
Sbjct:   65 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDLAG---RTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVRE-IRQHKLRKLNPPD------ESGPGCMSCKC 238          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.869e-17
Identity = 49/173 (28.32%), Postives = 83/173 (47.98%), Query Frame = -2
Query:  336 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 854
            D G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE+F  L   +Y    C V+++DV S  ++ N+ NW  + +        +N P V+ GNK+D+     +  S    R     K N+ Y++ SAK   N E+ F  +A+  +     E + +P
Sbjct:   18 DGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMP 180          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.747e-17
Identity = 56/169 (33.14%), Postives = 89/169 (52.66%), Query Frame = -2
Query:  348 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 854
            D GVGK++L  Q +   F ++Y  TI  D   K+ + +     L + DTAGQE + ++   + R  +  +LVY++ S  SFD ++ + ++ L      D D FP V++ NK D++    RVVS  +     A   +  Y ETSAK  +NVEEAF  + +   +  + EE
Sbjct:   16 DGGVGKSALTIQLIQSHFVDEYDPTI-EDSYRKKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQIL---RVKDKDTFPVVLVANKCDLEA--ERVVSRAEGEQ-LAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEE 177          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASH_MSVNS (GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RAS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.747e-17
Identity = 60/189 (31.75%), Postives = 99/189 (52.38%), Query Frame = -2
Query:  282 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  ++A+    S G IPY ETSAK    VE+AF  + +  ++  +  ++  PD       S P    C+C
Sbjct:   13 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVRE-IRQHKLRKLNPPD------ESGPGCMSCKC 186          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASH_HUMAN (GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.747e-17
Identity = 60/189 (31.75%), Postives = 99/189 (52.38%), Query Frame = -2
Query:  282 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  ++A+    S G IPY ETSAK    VE+AF  + +  ++  +  ++  PD       S P    C+C
Sbjct:   13 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVRE-IRQHKLRKLNPPD------ESGPGCMSCKC 186          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRAS_MOUSE2.869e-1733.33Ras-related protein R-Ras OS=Mus musculus GN=Rras ... [more]
RB33B_MOUSE2.869e-1736.31Ras-related protein Rab-33B OS=Mus musculus GN=Rab... [more]
RB33B_CHICK2.869e-1736.90Ras-related protein Rab-33B OS=Gallus gallus GN=RA... [more]
RAS_BOTFU2.869e-1730.15Ras-like protein OS=Botryotinia fuckeliana GN=ras1... [more]
RASW_DICDI2.869e-1735.06Ras-like protein rasW OS=Dictyostelium discoideum ... [more]
RASH_MSVHA2.869e-1731.75Transforming protein p29 OS=Harvey murine sarcoma ... [more]
RAN_DROME2.869e-1728.32GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
RAS_SCHPO3.747e-1733.14Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RASH_MSVNS3.747e-1731.75GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RA... [more]
RASH_HUMAN3.747e-1731.75GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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