CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASH_MSVMO (GTPase HRas OS=Moloney murine sarcoma virus GN=H-RAS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.090e-16
Identity = 59/189 (31.22%), Postives = 99/189 (52.38%), Query Frame = -2
Query:  282 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  ++A+    S G IPY +TSAK    VE+AF  + +  ++  +  ++  PD       S P    C+C
Sbjct:   13 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESRQAQDLARSYG-IPYIKTSAKTRQGVEDAFYTLVRE-IRQHKLRKLNPPD------ESGPGCMSCKC 186          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.090e-16
Identity = 51/168 (30.36%), Postives = 88/168 (52.38%), Query Frame = -2
Query:  351 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE 854
            D GVGK+++  Q++   F ++Y  TI  D   K+   +     L I DTAGQE + ++   F R  +  VL+Y + S  +F+ +    E+    A   D ++FP V++GNK D++    R V     R   A + N  +FE SAK+ + +++AF  + +   +S +E+
Sbjct:   19 DGGVGKSAMTIQFIQSTFVDEYDPTI-EDSYRKQCLIDSECAMLDILDTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQI---ARVKDLEHFPMVLVGNKCDLE--QDRQVPTSAGRD-LAKQYNCQFFEASAKQNVRIQDAFHGLVREIRRSQQEK 179          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.090e-16
Identity = 47/159 (29.56%), Postives = 84/159 (52.83%), Query Frame = -2
Query:  378 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 854
            D GVGKT+ + +++  +F  +Y  T+G +    + Q         +WDTAGQE+F  L   +Y  +DC ++++DV+S  ++ N+ NW  +          +  P V++GNK+DV     R V  ++ +     K N+ Y++ SA+   N E+ F  +A+
Sbjct:   17 DGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFQTNFGKTQFNVWDTAGQEKFGGLRDGYYIKSDCAIIMFDVSSRITYKNVPNWYRDITRVC-----ETIPMVLVGNKVDV---KDRQVKSRQIQ--FHRKRNLQYYDLSARSNYNFEKPFLWLAR 165          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB28_BOVIN (Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.090e-16
Identity = 68/204 (33.33%), Postives = 96/204 (47.06%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL-GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN----ALKSGEEEEIYLPDTIDVGNSSQ---------PRSSGC 854
            D   GKTSL   +  + F  QYK TIG DF  + +     L  TLQ+WD  GQ     +   +  GA   +LVYDV + +SF+NL +W    +++    + +  P V L GNKID++  + R V  +K   +C   G   +F  SAK G +V   FQ +A       L   E E+       D+ N +Q         PRSS C
Sbjct:   20 DGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGSLNVTLQVWDIGGQTIGGKMLDKYIYGAQGVLLVYDVTNYQSFENLEDWYS--VVKKVSEESETQPLVALVGNKIDLE--HMRTVKPEKHLRFCQENGFSSHF-VSAKTGDSVFLCFQKVAAEILGIKLNKAEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMC 218          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.424e-16
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  348 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 848
            GVGK++L  Q++   F ++Y  TI  D   K+   +D +  L + DTAGQE + ++   + R  +  +LVY + S  SF+ ++ + ++ L      D D FP VV+ NK D++    R V   + R      G   + ETSAK  INV++AFQ + +   K  +E++
Sbjct:   20 GVGKSALTIQFIQSHFVDEYDPTI-EDSYRKQCVIDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQIL---RVKDQDTFPVVVVANKCDLE--YERQVGMNEGRDLARHFG-CKFVETSAKVRINVDQAFQDLVREIRKYNKEQQ 179          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.424e-16
Identity = 55/165 (33.33%), Postives = 91/165 (55.15%), Query Frame = -2
Query:  354 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+    SR V  K+A+    S G IP+ ETSAK    V++AF  + +   K  E+
Sbjct:   13 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDLP---SRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASH_RRASV (Transforming protein p29 OS=Rasheed rat sarcoma virus GN=RAS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.424e-16
Identity = 59/189 (31.22%), Postives = 98/189 (51.85%), Query Frame = -2
Query:  282 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +  V  ++A+    S G IPY ETSAK    VE+AF  + +  ++  +  ++  PD       S P    C+C
Sbjct:   72 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AAHTVESRQAQDLARSYG-IPYIETSAKTRPGVEDAFYTLVRE-IRQHKLRKLNPPD------ESGPGCMSCKC 245          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.424e-16
Identity = 59/189 (31.22%), Postives = 98/189 (51.85%), Query Frame = -2
Query:  282 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L   DTAGQE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  ++A+    S G IPY ETSAK    VE+AF  + +  ++  +  ++  PD       S P    C+C
Sbjct:   13 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDYLDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVRE-IRQHKLRKLNPPD------ESGPGCMSCKC 186          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAS1_HYDMA (Ras-like protein RAS1 OS=Hydra magnipapillata GN=RAS1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.424e-16
Identity = 58/167 (34.73%), Postives = 86/167 (51.50%), Query Frame = -2
Query:  348 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 848
            GVGK++L  Q +   F   Y  TI   ++ K+V  +  +  L I DTAGQE + ++   + R  +  + ++ V S+KSF  ++N+R + L      D D  P V++GNK+D+     R VS K       S G IPY ETSAK    VEEAF  + +  L     +E
Sbjct:   19 GVGKSALTIQLIQNHFVEDYDPTIEDSYI-KQVVVDGAICILDILDTAGQEEYSAMREHYMRTGEGFLCIFAVTSLKSFQEIDNFRTQAL---RVKDADKVPMVLVGNKVDLP---KRDVSTKDGNDKALSFG-IPYVETSAKTKQGVEEAFFTLVREILADRRNQE 177          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.424e-16
Identity = 56/189 (29.63%), Postives = 88/189 (46.56%), Query Frame = -2
Query:  306 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG-----EEEEIYLPD-TIDVGNSSQ 854
            D G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV S  ++ N+  W  +          +N P V+ GNK+DV    +R V  K+       K N+ Y+E SAK   N E+ F  +A+     G     E   +  PD TID+    Q
Sbjct:   21 DGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAAQQQ 199          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASH_MSVMO1.090e-1631.22GTPase HRas OS=Moloney murine sarcoma virus GN=H-R... [more]
RAS2_RHIRA1.090e-1630.36Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
RAN_PLAFA1.090e-1629.56GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
RAB28_BOVIN1.090e-1633.33Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 ... [more]
RAS_LENED1.424e-1632.34Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RASK_MELGA1.424e-1633.33GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RASH_RRASV1.424e-1631.22Transforming protein p29 OS=Rasheed rat sarcoma vi... [more]
RASH_MOUSE1.424e-1631.22GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]
RAS1_HYDMA1.424e-1634.73Ras-like protein RAS1 OS=Hydra magnipapillata GN=R... [more]
RAN1_ORYSJ1.424e-1629.63GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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