CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAS2_HYDMA (Ras-like protein RAS2 OS=Hydra magnipapillata GN=RAS2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.429e-16
Identity = 57/168 (33.93%), Postives = 89/168 (52.98%), Query Frame = -2
Query:  354 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA---KNALKSGEE 848
            GVGK++L  Q++   F   Y  TI  D   K+   +D++  L I DTAGQE F ++   + R  +  +LV+ V    SFD +  +  + L      D + FP +++GNK D++  N R VS  +A+     K  + Y E+SAK+ INV+ AF  +    +NA K+  E
Sbjct:   18 GVGKSALTIQFIQSHFVQDYDPTI-EDSYRKQCVIDDKVAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQIL---RVKDIEEFPMILVGNKSDLE--NERTVSTAEAQE-LGRKLKVSYLESSAKQRINVDAAFHDLVRAIRNANKASVE 178          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.429e-16
Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = -2
Query:  393 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 854
            D G GKT+L+ +++  +F  QY AT+G +           +F + +WDTAGQER+  L   ++  + C ++++DV S  +++N+  W  + +         N P V+ GNK+D+        + KK   +   K NI   E SAK   NVE+ F
Sbjct:   18 DGGTGKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDLVRVCG-----NIPIVICGNKVDI----MHKKTWKKGVDF-DRKTNIYLIEMSAKSNYNVEKPF 161          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB28_PONAB (Ras-related protein Rab-28 OS=Pongo abelii GN=RAB28 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.429e-16
Identity = 66/204 (32.35%), Postives = 96/204 (47.06%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL-GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN----ALKSGEEEEIYLPDTIDVGNSSQ---------PRSSGC 854
            D   GKTSL   +  + F  +YK TIG DF  + +     L  TLQIWD  GQ     +   +  GA   +LVYD+ + +SF+NL +W    +++    + +  P V L GNKID++  + R +  +K   +C   G   +F  SAK G +V   FQ +A       L   E E+       D+ N +Q         PRSS C
Sbjct:   20 DGASGKTSLATCFAQETFGKRYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYT--VVKKVSEESETRPLVALVGNKIDLE--HMRTIKPEKHLRFCQENGFSSHF-VSAKTGDSVFLCFQKVAAEILGIKLNKAEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMC 218          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.429e-16
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = -2
Query:  351 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE 845
            VGK+SL  +YV   F +    T+G  F TK V        L+IWDTAGQE++ S+   ++RGA+  +LVYD+    SF     W ++   +  P +      +++GNK D+     R V+ ++ + +  S+  + + ETSAK    V E F  +A+  L+  +EE
Sbjct:   30 VGKSSLALRYVKNDFKS-ILPTVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGE---VLVMLVGNKTDL--SQEREVTFQEGKEFADSQ-KLLFMETSAKLNHQVSEVFNTVAQELLQRSDEE 187          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASN_PONAB (GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.172e-16
Identity = 55/157 (35.03%), Postives = 85/157 (54.14%), Query Frame = -2
Query:  378 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF ++N +RE+        D D+ P V++GNK D+    +R V  K+A     S G IP+ ETSAK    VE+AF  + +
Sbjct:   13 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGLLCVFAINNSKSFADINLYREQI---KRVKDSDDVPMVLVGNKCDLP---TRTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVR 161          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASN_CHICK (GTPase NRas OS=Gallus gallus GN=NRAS PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.172e-16
Identity = 55/157 (35.03%), Postives = 86/157 (54.78%), Query Frame = -2
Query:  378 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF ++N +RE+        D D+ P V++GNK D+    +R V  K+A+    S G IP+ ETSAK    VE+AF  + +
Sbjct:   13 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQI---KRVKDSDDVPMVLVGNKCDLP---TRTVDTKQAQELAKSYG-IPFIETSAKTRQGVEDAFYTLVR 161          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASK_RIVMA (GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.172e-16
Identity = 54/165 (32.73%), Postives = 91/165 (55.15%), Query Frame = -2
Query:  354 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+    +R V  K+A+    S G IP+ ETSAK    V++AF  + +   K  E+
Sbjct:   13 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKYDLP---TRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.172e-16
Identity = 48/159 (30.19%), Postives = 78/159 (49.06%), Query Frame = -2
Query:  378 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 854
            D G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV S  ++ N+  W ++          DN P V+ GNK+D+    +R V  K        K N+ Y+E SAK   N E+ F  +A+
Sbjct:   25 DGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVC-----DNIPIVLCGNKVDM---KNRQVKAKMVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 173          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.172e-16
Identity = 48/159 (30.19%), Postives = 78/159 (49.06%), Query Frame = -2
Query:  378 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 854
            D G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV S  ++ N+  W ++          DN P V+ GNK+D+    +R V  K        K N+ Y+E SAK   N E+ F  +A+
Sbjct:   25 DGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVC-----DNIPIVLCGNKVDM---KNRQVKAKMVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 173          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB32C_DICDI (Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.143e-16
Identity = 50/165 (30.30%), Postives = 82/165 (49.70%), Query Frame = -2
Query:  348 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 842
            GKTS++ +Y +  F  +YK TIG DF  K ++   +   LQ+WD AGQERF  +   +++ A   V+V+D     +F     W+++        + +N P ++L NK D+          +    +C       YF TSAKE   + EA + + K  L+S + +E
Sbjct:   40 GKTSIIQRYCHNNFQPKYKPTIGVDFQQKVLEIMGQKVLLQLWDIAGQERFGHMTRVYFQNAHGAVIVFDATRSGTFLGAKAWKDDI---DYCFNNENLPTILLANKCDL--LTPPYTFPEDINTFCEQNRFNKYFYTSAKEDTGINEALEELVKIILESYQTQE 199          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS2_HYDMA2.429e-1633.93Ras-like protein RAS2 OS=Hydra magnipapillata GN=R... [more]
RANL_DROME2.429e-1631.17GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAB28_PONAB2.429e-1632.35Ras-related protein Rab-28 OS=Pongo abelii GN=RAB2... [more]
RAB17_HUMAN2.429e-1632.73Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]
RASN_PONAB3.172e-1635.03GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1[more]
RASN_CHICK3.172e-1635.03GTPase NRas OS=Gallus gallus GN=NRAS PE=2 SV=1[more]
RASK_RIVMA3.172e-1632.73GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=... [more]
RAN3_ORYSJ3.172e-1630.19GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI3.172e-1630.19GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RB32C_DICDI4.143e-1630.30Ras-related protein Rab-32C OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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