CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.143e-16
Identity = 48/159 (30.19%), Postives = 78/159 (49.06%), Query Frame = -2
Query:  378 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 854
            D G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV S  ++ N+  W  +          +N P V+ GNK+DV    +R V  K+       K N+ Y+E SAK   N E+ F  +A+
Sbjct:   21 DGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.067e-16
Identity = 54/165 (32.73%), Postives = 91/165 (55.15%), Query Frame = -2
Query:  354 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N++KSF++++++RE+        D ++ P V++GNK  +    SR V  K+A+    S G IP+ ETSAK    V++AF  + +   K  E+
Sbjct:   13 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCALP---SRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.067e-16
Identity = 54/167 (32.34%), Postives = 92/167 (55.09%), Query Frame = -2
Query:  348 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 848
            GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+F ++   + +     VLVY + +  +F++L + RE+ L      D D+ P V++GNK D++    RVV ++  +   A++ N  + ETSAK  +NV + F  + +   K   E++
Sbjct:   13 GVGKSALTVQFVQCIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMVLVGNKCDLE--EERVVGKELGKN-LATQFNCAFMETSAKAKVNVNDIFYDLVRQINKKSPEKK 172          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAS1_DROMO (Ras-like protein 1 OS=Drosophila mojavensis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.067e-16
Identity = 53/166 (31.93%), Postives = 84/166 (50.60%), Query Frame = -2
Query:  351 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  +LV+ VNS KSF+++  +RE+        D +  P V++GNK D+   N             A +  IPY ETSAK  + V++AF  + +   K  + +
Sbjct:   13 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQI---KRVKDAEEVPMVLVGNKCDLPSWN------------VAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNK 162          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAYL_HUMAN (Putative GTP-binding protein RAY-like OS=Homo sapiens GN=RABL4 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.230e-16
Identity = 58/163 (35.58%), Postives = 84/163 (51.53%), Query Frame = -2
Query:  378 DSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDRLFTLQ--IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 854
            D  VGKT+L   + +    F   Y  T G D + K V   D   +++  I+D+AG+E F  +    +   +   LVYDV + +SF+N + W E+   QA      + P V++GNK D+ G   R V   +ARAW   +G +  FETS KE  N E  F C+AK
Sbjct:   13 DPAVGKTALAQIFRSDGAHFQKSYTLTTGMDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCSKWLEKARSQAPGI---SLPGVLVGNKTDLAG--RRAVDSAEARAWALGQG-LECFETSVKEMENFEAPFHCLAK 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAS_ARTSA (Ras-like protein (Fragment) OS=Artemia salina PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.230e-16
Identity = 59/186 (31.72%), Postives = 96/186 (51.61%), Query Frame = -2
Query:  291 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 848
            GVGK++L  Q +   F ++Y  TI  D   ++V  +     L I DTAGQE + ++   + R  +  +LV+ VN+ KSF++++ +RE+        D +  P V++GNK D+    +R V   +AR   A +  IP+ ETSAK  + V++ F  + +   K          D +  GNSS+   SG
Sbjct:    2 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRQQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNNAKSFEDISAYREQI---KRVKDAEEVPMVLVGNKCDLP---TRAVDMSQARE-VARQYGIPFVETSAKTRMGVDDGFYTLVREIKK----------DKMKKGNSSRRGRSG 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RASK_MONDO (GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.230e-16
Identity = 54/165 (32.73%), Postives = 90/165 (54.55%), Query Frame = -2
Query:  354 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 848
            GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+    SR V  K+A+    S G IP+ ETSAK     ++AF  + +   K  E+
Sbjct:   13 GVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDLP---SRTVDTKQAQDLARSYG-IPFIETSAKTRQGGDDAFYTLVREIRKHKEK 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.230e-16
Identity = 51/181 (28.18%), Postives = 88/181 (48.62%), Query Frame = -2
Query:  327 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF-----QCIAKNALKSGEEEEIYLPDTI 854
            D GVGKT+ + +++  +F  +Y  T+G                  +WDTAGQE+F  L   +Y   +C ++++DV S  S+ N+ NW  +          +N P V+ GNK+DV     R V  K ++     + N+ Y++ SAK   N E+ F     + +   A+   ++  + LP+T+
Sbjct:   14 DGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVC-----ENIPIVLCGNKVDV---KDRKV--KPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETV 184          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.230e-16
Identity = 48/165 (29.09%), Postives = 79/165 (47.88%), Query Frame = -2
Query:  360 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 854
            D G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  +          +N P V+ GNK+DV    +R V  K+       K N+ Y+E SAK   N E+ F  +A+     G
Sbjct:   21 DGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDG 175          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.230e-16
Identity = 48/165 (29.09%), Postives = 79/165 (47.88%), Query Frame = -2
Query:  360 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 854
            D G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  +          +N P V+ GNK+DV    +R V  K+       K N+ Y+E SAK   N E+ F  +A+     G
Sbjct:   21 DGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDG 175          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN2_ORYSI4.143e-1630.19GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RASK_XENLA7.067e-1632.73GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]
RAS3_DROME7.067e-1632.34Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]
RAS1_DROMO7.067e-1631.93Ras-like protein 1 OS=Drosophila mojavensis GN=Ras... [more]
RAYL_HUMAN9.230e-1635.58Putative GTP-binding protein RAY-like OS=Homo sapi... [more]
RAS_ARTSA9.230e-1631.72Ras-like protein (Fragment) OS=Artemia salina PE=3... [more]
RASK_MONDO9.230e-1632.73GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 ... [more]
RAN_DICDI9.230e-1628.18GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RAN2_SOLLC9.230e-1629.09GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN1_SOLLC9.230e-1629.09GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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