CB290285

Overview
NameCB290285
Unique NameCB290285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11542 contig Csv1_Contig11542:70..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290285 vs. ExPASy Swiss-Prot
Match: HTPG_RHIEC (Chaperone protein htpG OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=htpG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.425e-17
Identity = 43/102 (42.16%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   79 FLAEINQLVSLIINTFYSNKEIFLRELISNSSDALDKIGFESLTYKS*LYAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNKLGTIARSGTKEFMEALA 384
            F A++ +L+ +++++ YS+K +FLRELISN +DA +K+ +E++   S L A  E  I +  D+ +  L + D+GIGM + +++  LGTIARSGT+ FME +A
Sbjct:   14 FEADVARLLHMMVHSVYSDKGVFLRELISNGADACEKLRYEAIETPSLLAADAESRIMLRLDEESRQLVVEDNGIGMRRDEMIEALGTIARSGTRAFMERIA 115          
BLAST of CB290285 vs. ExPASy Swiss-Prot
Match: HTPG_NITWN (Chaperone protein htpG OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=htpG PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.692e-16
Identity = 42/103 (40.78%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   79 FLAEINQLVSLIINTFYSNKEIFLRELISNSSDALDKIGFESLTYKS*LYAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNKLGTIARSGTKEFMEALAA 387
            F A++ +L+ +++++ YS+K++FLRELISN++DA +++ +E+++  + L  +    I I  D     L++ D+GIGM + +LV+ LGTIARSGTK F+E   A
Sbjct:   16 FEADVAKLLQMMVHSVYSDKDVFLRELISNAADACERLRYEAISDPALLTDETRPRISITIDAERRQLAVEDNGIGMGRDELVDALGTIARSGTKAFIEQAEA 118          
BLAST of CB290285 vs. ExPASy Swiss-Prot
Match: HTPG_NITHX (Chaperone protein htpG OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=htpG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.023e-15
Identity = 41/101 (40.59%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   79 FLAEINQLVSLIINTFYSNKEIFLRELISNSSDALDKIGFESLTYKS*LY--AQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNKLGTIARSGTKEFME 375
            F A++ +L+ +++++ YS+K++FLRELISN++DA +++ +++++  + L   A+P++ I I  D     L++ D+GIGM++ ++V+ LGTIARSGTK F+E
Sbjct:   16 FEADVAKLLQMMVHSVYSDKDVFLRELISNAADACERLRYDAISDPALLADDARPQIAITI--DAERRQLTVDDNGIGMSRDEMVDALGTIARSGTKAFIE 114          
BLAST of CB290285 vs. ExPASy Swiss-Prot
Match: TRAP1_DICDI (TNF receptor-associated protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=trap1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.661e-15
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   76 AFLAEINQLVSLIINTFYSNKEIFLRELISNSSDALDKIGFESLTYKS*LY-AQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNKLGTIARSGTKEFMEALAAGAD 396
            +F  E  +++ ++  + Y+ KE+F+RELISN+SDA++K+    LT  S +  A     I I  D+ N +L I DSGIGMTK +++  LG I  SG+ +F++ L    D
Sbjct:  102 SFQTETQKILHIVAESLYTEKEVFIRELISNASDAIEKVRHTQLTNASMIEDASIPFEIKISTDEDNKTLIIQDSGIGMTKDEMIKNLGKIGYSGSSDFIKKLGENPD 209          
BLAST of CB290285 vs. ExPASy Swiss-Prot
Match: HS904_HUMAN (Putative heat shock protein HSP 90-alpha A4 OS=Homo sapiens GN=HSP90AA4P PE=5 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  199 ESLTYKS*LYAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNKLGTIARSGTKEFMEALAAGADVS 402
            ESLT  S L +  E  I +IP+K + +L+I+D+GIGMTKADL+N LGTI +S TK FME L AGAD+S
Sbjct:    2 ESLTDPSKLDSGKEPHISLIPNKQDRTLTIVDTGIGMTKADLINNLGTITKSETKVFMEVLQAGADIS 69          
The following BLAST results are available for this feature:
BLAST of CB290285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_RHIEC5.425e-1742.16Chaperone protein htpG OS=Rhizobium etli (strain C... [more]
HTPG_NITWN2.692e-1640.78Chaperone protein htpG OS=Nitrobacter winogradskyi... [more]
HTPG_NITHX1.023e-1540.59Chaperone protein htpG OS=Nitrobacter hamburgensis... [more]
TRAP1_DICDI8.661e-1538.89TNF receptor-associated protein 1 homolog, mitocho... [more]
HS904_HUMAN4.299e-1458.82Putative heat shock protein HSP 90-alpha A4 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290285 ID=CB290285; Name=CB290285; organism=Citrus sinensis; type=EST; length=402bp
TGGTTATAAGTGGGAAGAGATAGTTTTTTGGTTGAACGGCAGGTCGTTTC
GATGGCATCAGAGACACCGACGTTTGCCTTTCTGGCTGAGATCAACCAGT
TGGTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGATCTTTCTT
CGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATCGGATTTGA
AAGCTTGACATACAAGAGCTAGCTATATGCCCAACCAGAGCTTTTCATTC
ACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTGACAGTGGT
ATTGGCATGACTAAGGCTGATTTGGTGAACAAGCTTGGGACAATTGCTAG
GTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGCGGATGTGA
GC
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