CB290289

Overview
NameCB290289
Unique NameCB290289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 82/117 (70.09%), Postives = 91/117 (77.78%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:   99 KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 82/117 (70.09%), Postives = 91/117 (77.78%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:   99 KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQIAQTTALPDEDDD 215
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 82/117 (70.09%), Postives = 91/117 (77.78%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:   99 KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 82/117 (70.09%), Postives = 91/117 (77.78%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:   99 KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.484e-42
Identity = 81/117 (69.23%), Postives = 90/117 (76.92%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPE+ +D                  LPD+DDD
Sbjct:   98 KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQYEHDLKVASETALPDEDDD 214
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.938e-42
Identity = 81/117 (69.23%), Postives = 90/117 (76.92%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE  ALAPPE+ +D                  LPD+DDD
Sbjct:   98 KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHDLKVASETALPDEDDD 214
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.531e-42
Identity = 81/117 (69.23%), Postives = 90/117 (76.92%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPN  FV  PALAPPEV +D               +  LPD+DDD
Sbjct:   99 KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQHAQATALPDEDDD 215
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_ONCVO (GTP-binding nuclear protein Ran OS=Onchocerca volvulus GN=ran-1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 82/117 (70.09%), Postives = 90/117 (76.92%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP WHRDL RVCENIPIVLCGN VDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+L RKL GDPNL FV  PALAPPEVQ+D               +  LPDDD+D
Sbjct:   98 KNVPNWHRDLARVCENIPIVLCGNFVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLVRKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 82/119 (68.91%), Postives = 91/119 (76.47%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAF 366
            KNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P+L FV +PAL P E  ID               + PLPD+DD  F
Sbjct:   96 KNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPSLEFVATPALRPAETAIDPEVMQAMQKDLEEANAMPLPDEDDADF 214
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.619e-42
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PAL PPEV++D               +  LPD+D++
Sbjct:   99 KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQEAQATALPDEDEE 215
The following BLAST results are available for this feature:
BLAST of CB290289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN_HUMAN8.700e-4370.09GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]
RAN_CHICK8.700e-4370.09GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_CANFA8.700e-4370.09GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BOVIN8.700e-4370.09GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
RAN_SALSA1.484e-4269.23GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_CARAU1.938e-4269.23GTP-binding nuclear protein Ran OS=Carassius aurat... [more]
RAN_XENTR2.531e-4269.23GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_ONCVO5.639e-4270.09GTP-binding nuclear protein Ran OS=Onchocerca volv... [more]
GSP1_YARLI5.639e-4268.91GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
RAN_DROME9.619e-4267.52GTP-binding nuclear protein Ran OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290289 ID=CB290289; Name=CB290289; organism=Citrus sinensis; type=EST; length=845bp
GCCCGTGGCAAGAATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTG
TGAAAATATACCGATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATA
GGCAAGTCAAGGCAAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAG
TACTATGAGATTTCTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTT
GTACCTTGCCAGGAAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAAT
CTCCTGCTCTCGCTCCTCCAGAAGTACAGATTGACTTAGCTGCACAGCAA
CAACATGAAGCCGAGCTTGCCGCAGCAGCTAGCCAGCCTCTTCCTGATGA
CGATGATGATGCATTTGAGTAGAGAGGAACTGCTTGGACGGGTGTAGGCG
CAACCTCTCATACTGCTGCTTGACTTAAAAATGCTGTTATTTTGGAAATT
TTCAACACATGGCGGAGATTTGGTTATCAGCGTAGGGGTGACCATCGAGA
ACAATGGATTATAGTAGTTAGGTTGTACCTTTAGATACTTGTTGGAGACT
CTTTTTATGCTTGTTTTTTTTTGGGAGTTTTCTTATTACTGGAATGATGT
TTCAGTGACGTGGATTATGCCATTCCAATACTTTTATGCATAAGTTTTGT
ATGTTCCAACCAGTGGCGCATCAGTTGAATCATGAGTCCTGAGTTGTAGC
GTTATGCCAAATATATTTGTTTCAAATTGACTTGAGTGGCAGTGAGCCAG
TGATGGCTGGTTCTAATCAACGGCCCATTGTTGCCAATGGCAATTGAGTA
ATATGATGGAGTTTGATTAGGGAAACATAAGAATAAAAAATCAAA
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