CB290289

Overview
NameCB290289
Unique NameCB290289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.063e-40
Identity = 78/117 (66.67%), Postives = 90/117 (76.92%), Query Frame = 1
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP+WH+DL RVCENIPIVLCGNKVD+K+ +VKAK + FHRKKNLQYY+ISAKSNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPD++DD
Sbjct:   99 KNVPSWHKDLVRVCENIPIVLCGNKVDIKDMKVKAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.814e-40
Identity = 78/117 (66.67%), Postives = 90/117 (76.92%), Query Frame = 1
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP+WH+DL RVCENIPIVLCGNKVDVK+ +VKAK + FHRKKNLQYY+ISA+SNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPD++DD
Sbjct:   99 KNVPSWHKDLVRVCENIPIVLCGNKVDVKDMKVKAKPILFHRKKNLQYYDISARSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.278e-40
Identity = 78/117 (66.67%), Postives = 88/117 (75.21%), Query Frame = 1
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+  L FV +PALAPP   +D                 PLP+++DD
Sbjct:   96 KNVPNWHRDLTRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNNALEFVAAPALAPPTAVVDQELMEKYRAEMDEAAQMPLPNEEDD 212          
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.664e-33
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 1
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI--DXXXXXXXXXXXXXXXSQ--PLPDDDDDAF 366
            KN+P WH+DL R+CEN+PIVL GNKVD K+ +VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDPNL+ VE  ALAP ++ +  D               +Q   LPD++DD F
Sbjct:  100 KNIPKWHKDLTRICENVPIVLVGNKVDSKDSKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPNLNLVEGIALAPVDIHMTEDQIKQLQMEHDEAMNLAQQGQLPDEEDDEF 222          
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.066e-32
Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 1
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 360
            KNVP WH DL RVCENIPIVLCGNKVDVK+R+VK  Q+ FHR+ NL YY++SAKSNYNFEKPF++L  KL G+  +  V+ P L  PE  +D               + PLP+D+DD
Sbjct:   95 KNVPNWHSDLTRVCENIPIVLCGNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETVLDSNLMSLYEKEVADAAALPLPEDNDD 211          
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.392e-32
Identity = 68/125 (54.40%), Postives = 87/125 (69.60%), Query Frame = 1
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ----IDXXXXXXXXXXXXXXXSQP--LPDDDDDAF 366
            KN+P WH+DL R+CENIPIVL GNKVD K+R+VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDP L+ VE  AL  P+ +     D               +Q   LPDD+DD F
Sbjct:  100 KNIPKWHKDLTRICENIPIVLVGNKVDSKDRKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPTLNLVEGIALVAPDTEHVMTEDQIKQLEMEQAEAMNLAQQGVLPDDEDDEF 224          
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.010e-31
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 1
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 285
            KNVP W+RD+ RVCE IP+VL GNKVDVK+RQVK++Q+ FHRK+NLQYY++SA+SNYNFEKPFL+LAR+L+  PNL FV   A A PE QID
Sbjct:   98 KNVPNWYRDITRVCETIPMVLVGNKVDVKDRQVKSRQIQFHRKRNLQYYDLSARSNYNFEKPFLWLARRLSNQPNLVFVGEHAKA-PEFQID 188          
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.951e-30
Identity = 66/110 (60.00%), Postives = 78/110 (70.91%), Query Frame = 1
Query:   13 NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPL 342
            N+  W+RDL RVC+NIPIVLCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGD  L FVES     PE QID               +QPL
Sbjct:  103 NIDRWYRDLRRVCKNIPIVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFVES-----PEAQIDNLDVESLQLLTVEAGTQPL 207          
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   13 NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLP 345
            NV  WHRDL RVC NIPIV+CGNKVD+ +++   K V F RK N+   E+SAKSNYN EKPF+YL RKL GDP+L  V+SPA+ PP+V                  S+PLP
Sbjct:  100 NVKRWHRDLVRVCGNIPIVICGNKVDIMHKKTWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKLVGDPSLQLVQSPAIQPPKVVFTDEMSRQVESLFNEAKSKPLP 210          
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.482e-22
Identity = 51/126 (40.48%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   10 KNVPTWHRDLCRVCEN-----------IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDD 354
            KNV +W+RD+ R+C             + IVL GNK DVK+R+++ + V FHR KN+ Y EISAK N+N+E P L + R L  DP + F ++PAL P ++ +D               + PLPDDD
Sbjct:  101 KNVESWYRDVFRICPTRRDASTGEEKPLAIVLVGNKCDVKDREIRTQTVKFHRSKNIPYVEISAKDNFNYELPILSILRTLLNDPTIQFSQAPALLPADIGMDAATREQINKDLEAVNNVPLPDDD 226          
The following BLAST results are available for this feature:
BLAST of CB290289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RANT_RAT1.063e-4066.67GTP-binding nuclear protein Ran, testis-specific i... [more]
RANT_MOUSE1.814e-4066.67GTP-binding nuclear protein Ran, testis-specific i... [more]
GSP1_NEUCR5.278e-4066.67GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]
RAN_TETPY3.664e-3354.47GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAN_DICDI1.066e-3255.56GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RAN_TETTH1.392e-3254.40GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RAN_PLAFA2.010e-3169.57GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
RAN4_ARATH4.951e-3060.00GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RANL_DROME3.004e-2753.15GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAN_GIALA6.482e-2240.48GTP-binding nuclear protein Ran OS=Giardia lamblia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290289 ID=CB290289; Name=CB290289; organism=Citrus sinensis; type=EST; length=845bp
GCCCGTGGCAAGAATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTG
TGAAAATATACCGATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATA
GGCAAGTCAAGGCAAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAG
TACTATGAGATTTCTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTT
GTACCTTGCCAGGAAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAAT
CTCCTGCTCTCGCTCCTCCAGAAGTACAGATTGACTTAGCTGCACAGCAA
CAACATGAAGCCGAGCTTGCCGCAGCAGCTAGCCAGCCTCTTCCTGATGA
CGATGATGATGCATTTGAGTAGAGAGGAACTGCTTGGACGGGTGTAGGCG
CAACCTCTCATACTGCTGCTTGACTTAAAAATGCTGTTATTTTGGAAATT
TTCAACACATGGCGGAGATTTGGTTATCAGCGTAGGGGTGACCATCGAGA
ACAATGGATTATAGTAGTTAGGTTGTACCTTTAGATACTTGTTGGAGACT
CTTTTTATGCTTGTTTTTTTTTGGGAGTTTTCTTATTACTGGAATGATGT
TTCAGTGACGTGGATTATGCCATTCCAATACTTTTATGCATAAGTTTTGT
ATGTTCCAACCAGTGGCGCATCAGTTGAATCATGAGTCCTGAGTTGTAGC
GTTATGCCAAATATATTTGTTTCAAATTGACTTGAGTGGCAGTGAGCCAG
TGATGGCTGGTTCTAATCAACGGCCCATTGTTGCCAATGGCAATTGAGTA
ATATGATGGAGTTTGATTAGGGAAACATAAGAATAAAAAATCAAA
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