CB290290

Overview
NameCB290290
Unique NameCB290290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290290 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.109e-29
Identity = 81/243 (33.33%), Postives = 123/243 (50.62%), Query Frame = -1
Query:   17 FGLLKVGPEGG---LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVFLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGIFKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISDQGNVLEILEEIGRKMWRSISEVEGKDGNLWIGSVNMPY 721
            +GL +V P  G   +  +  T  EG    F N L + Q    IYFTDSSS++QRR+ + +++ G   GRL++YD  TK+V V +  L FPNGV LS   +++L+ ET   RI RY++    K G    V  +PG PDNI+ S  GG+WV +   R      +L F    PWI  ++ KL         ++ KL     + + +S+ G+      +        +SE    +G L++GS   P+
Sbjct:  169 YGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIKRMIFKL-----LSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPF 406          
BLAST of CB290290 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.092e-28
Identity = 81/237 (34.18%), Postives = 115/237 (48.52%), Query Frame = -1
Query:   11 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVFLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR-SPRGGFWVGIHSRRKGIFKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISDQGNVLEILEEIGRKMWRSISEVEGKDGNLWIGSVNMPYAG 718
            GL  +   GGLA  +A    G PF F + LD+D +TG++YFT  SS F  R+ +  + + D TG+  KYDP+ K VTV +  LS   G A+S DG+++L+ + T   I RYW+K SKAGT E        PDNIKR    G FWV                             +V   +     S     A+++S  G VL+ +    +     +SEV    G L+IG++  P+AG
Sbjct:  121 GLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSNPDNIKRIGSTGNFWVA---------------------------SVVNSATGPTNPS-----AVKVSSAGKVLQTIPLKDKFGDTLVSEVNEYKGQLYIGALFGPFAG 325          
The following BLAST results are available for this feature:
BLAST of CB290290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
APMAP_CHICK1.109e-2933.33Adipocyte plasma membrane-associated protein OS=Ga... [more]
STS3_ARATH2.092e-2834.18Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01af01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290290 ID=CB290290; Name=CB290290; organism=Citrus sinensis; type=EST; length=721bp
AATTGTAATAACCTGCATAAGGCATATTAACTGAACCAATCCACAAATTC
CCATCTTTCCCTTCAACTTCACTAATAGATCTCCACATCTTTCTACCTAT
TTCTTCCAAAATCTCCAATACATTCCCTTGGTCACTTATCCTCATAGCCA
TTCCACCATTCCCACTTAGCTTAACCAAACTTGAATGAATTTTAACAATG
TCAATTGGTAGTTTAATCAAAACATTTCCTATCCAAGGAAATGAAAGAAC
CAATTTAAAGATCCCTTTCCTTCTCGAATGGATACCAACCCAAAATCCTC
CTCTGGGGCTTCTTTTTATGTTATCTGGAAACCCTGGGAGTTGAGCGACG
ATTTCTATTGTTCCGGCTTTCGATGTTTTTAGCCAATACCTTAGAATTCT
GCAGCTTGTTGTCTCTGCAAGTAATATGTAATTGCCATCTTCACTCAAAG
CCACCCCATTTGGAAATGAGAGATTCCCAAGAAAAACAGTTACTTGTTTT
GTTGCTGGGTCATACTTCATTAGCCTTCCTGTTTTATCACCACTTAGTAT
TACAGAAATGTGGTTCCTCCTTTGAAACTGTGAACTGCTGTCGGTAAAAT
AAATGATTCCGGTGGATTGATCGATGTCTAGACTATTACAGAATCTGAAA
GGAATGCCCTCTGATTGAGTAGCAACGGCAGTGGCCAATCCTCCTTCGGG
TCCCACTTTAAGCAATCCAAA
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