CB290296

Overview
NameCB290296
Unique NameCB290296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:28..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.044e-41
Identity = 82/109 (75.23%), Postives = 94/109 (86.24%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 QAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.781e-41
Identity = 84/109 (77.06%), Postives = 92/109 (84.40%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = -1 
Query:  422 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 751
            +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+F  YPP G FAVRDMRQTVAVGVIKNVEKK
Sbjct:  335 QEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = -1 
Query:  422 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 751
            +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+F  YPP G FAVRDMRQTVAVGVIKNVEKK
Sbjct:  335 QEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = -1 
Query:  422 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 751
            +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+F  YPP G FAVRDMRQTVAVGVIKNVEKK
Sbjct:  335 QEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = -1 
Query:  422 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 751
            +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+F  YPP G FAVRDMRQTVAVGVIKNVEKK
Sbjct:  335 QEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = -1 
Query:  422 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 751
            +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+F  YPP G FAVRDMRQTVAVGVIKNVEKK
Sbjct:  335 QEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
The following BLAST results are available for this feature:
BLAST of CB290296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A2_XENLA1.044e-4175.23Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_CHICK1.781e-4177.06Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A2_RAT2.326e-4174.55Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_RABIT2.326e-4174.55Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_MOUSE2.326e-4174.55Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A2_HUMAN2.326e-4174.55Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN2.326e-4174.55Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A1_RAT2.326e-4176.15Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT2.326e-4176.15Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]
EF1A1_PONAB2.326e-4176.15Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01af04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290296 ID=CB290296; Name=CB290296; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTACCAAAAAATGTTTTACCCTGTTGTCTCATTTC
TCTCATATGATCGACAAAGTTAAAAACATCAAATGGAACCATCAAAAACA
GTCCCCCTTTCTCTCAGGGCAAAATTTAATACAACACCTACAAAATATAT
GAGCCCCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAAC
AAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACT
CTGATATAAAACCAAATTCAAAAAATTAAAATGAAGTCCCGTAAAACAAA
CTAAAACACAACAAAAATAGCATAAACAAAAAAAATAAAAGCTAACTATA
GCAAATAAATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAAACTTGGT
GACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAA
CAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACAACCAAAAGGGGGG
TAGTCAAAAAAGGTTTCAACAACCATGGGCTTGGGGGGAATCATCTTAAC
CATTCCAGCATCTCCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCT
TGCCTGATCGCCTATCAATCTTCGTCACAAGCTCAAAAAACTTGACGGCA
ATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTG
GCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCC
T
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