CB290296

Overview
NameCB290296
Unique NameCB290296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:28..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.968e-41
Identity = 80/107 (74.77%), Postives = 91/107 (85.05%), Query Frame = -1 
Query:  425 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEK 745
            AA+FT+QVI+MNHPGQ+G GYAPVLDCHT+HIA KF EL+ KIDRR+GK  E  PKF+K+GD+ +VKMIP KPM VE F DYPP G FAVRDMRQTVAVGVIK VEK
Sbjct:  336 AASFTAQVIVMNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKATESAPKFIKSGDSAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVEK 442
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.968e-41
Identity = 82/109 (75.23%), Postives = 92/109 (84.40%), Query Frame = -1 
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAANF +QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+F  YPP G FAVRDMRQTVAVGVIK+VEKK
Sbjct:  336 EAANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.182e-41
Identity = 79/107 (73.83%), Postives = 92/107 (85.98%), Query Frame = -1 
Query:  425 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEK 745
            AA+FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KF EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP KPM VE F DYPP G FAVRDMRQTVAVGVIK V+K
Sbjct:  336 AASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442
[Close]
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.182e-41
Identity = 77/111 (69.37%), Postives = 96/111 (86.49%), Query Frame = -1 
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA KF EL+ KIDRR+GK +E  PKF+K+GDA +VK++P KPM VE++ +YPP G FAVRDMRQTVAVGVIK+VEK +
Sbjct:  335 KEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTE 445
The following BLAST results are available for this feature:
BLAST of CB290296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A1_PANTR2.326e-4176.15Elongation factor 1-alpha 1 OS=Pan troglodytes GN=... [more]
EF1A1_MOUSE2.326e-4176.15Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef... [more]
EF1A1_HUMAN2.326e-4176.15Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
EF1A1_FELCA2.326e-4176.15Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1... [more]
EF1A1_CRIGR2.326e-4176.15Elongation factor 1-alpha 1 OS=Cricetulus griseus ... [more]
EF1A1_BOVIN2.326e-4176.15Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A... [more]
EF1A_TRIRE3.968e-4174.77Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_DANRE3.968e-4175.23Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A_SORMA5.182e-4173.83Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_PIRIN5.182e-4169.37Elongation factor 1-alpha OS=Piriformospora indica... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01af04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290296 ID=CB290296; Name=CB290296; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTACCAAAAAATGTTTTACCCTGTTGTCTCATTTC
TCTCATATGATCGACAAAGTTAAAAACATCAAATGGAACCATCAAAAACA
GTCCCCCTTTCTCTCAGGGCAAAATTTAATACAACACCTACAAAATATAT
GAGCCCCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAAC
AAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACT
CTGATATAAAACCAAATTCAAAAAATTAAAATGAAGTCCCGTAAAACAAA
CTAAAACACAACAAAAATAGCATAAACAAAAAAAATAAAAGCTAACTATA
GCAAATAAATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAAACTTGGT
GACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAA
CAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACAACCAAAAGGGGGG
TAGTCAAAAAAGGTTTCAACAACCATGGGCTTGGGGGGAATCATCTTAAC
CATTCCAGCATCTCCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCT
TGCCTGATCGCCTATCAATCTTCGTCACAAGCTCAAAAAACTTGACGGCA
ATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTG
GCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCC
T
back to top