CB290296

Overview
NameCB290296
Unique NameCB290296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:28..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.276e-39
Identity = 75/110 (68.18%), Postives = 93/110 (84.55%), Query Frame = -1
Query:  419 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 748
            EAA+F +QVI++NHPGQIG GY PVLDCHT+HIA KF EL+ KIDRR+GK +E  PKF+K+GDA +VK++  KP+ VET+ DYPP G FAVRDMRQTVAVGVIK+V+K +
Sbjct:  334 EAASFNAQVIVLNHPGQIGAGYTPVLDCHTAHIACKFAELIEKIDRRTGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.276e-39
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF EL  K+DRR+GK++E  PKFLK+GDAG+V++IP KP+ VE F DY P G FAVRDMRQTVAVGVIK V K D
Sbjct:  335 KESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDD 445          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.276e-39
Identity = 78/109 (71.56%), Postives = 91/109 (83.49%), Query Frame = -1
Query:  416 ANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKDP 742
            A+FT+QVII+NHPGQI  GY+PVLDCHT+HIA KF EL+ KIDRRSGK++E+ PKF+K+GDA + KM+P KPM VE F DY P G FAVRDMRQTVAVGVIK VEK  P
Sbjct:  336 ASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.276e-39
Identity = 78/109 (71.56%), Postives = 91/109 (83.49%), Query Frame = -1
Query:  416 ANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKDP 742
            A+FT+QVII+NHPGQI  GY+PVLDCHT+HIA KF EL+ KIDRRSGK++E+ PKF+K+GDA + KM+P KPM VE F DY P G FAVRDMRQTVAVGVIK VEK  P
Sbjct:  336 ASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.276e-39
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF EL  K+DRR+GK++E  PKFLK+GDAG+V++IP KP+ VE F DY P G FAVRDMRQTVAVGVIK V K D
Sbjct:  335 KESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDD 445          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.177e-39
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL+ KIDRRS K +E  PKF+K+GD+ +VKM+P KPM VE + DYPP G FAVRDMRQTVAVGVIK VEK D
Sbjct:  333 KESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 442          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.844e-39
Identity = 74/111 (66.67%), Postives = 92/111 (82.88%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            ++  NF +QVI++NHPGQI  GYAPVLDCHT+HIA KF E+ +K+DRRSGK LE+EPKF+K+G+A +V+M+P KPM VE F  YPP G FAVRDM+QTVAVGVIK V KK+
Sbjct:  323 KDTTNFLAQVIVLNHPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEVVKKE 433          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.844e-39
Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = -1
Query:  419 ANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 742
            A+F +QVII+NHPG+I  GYAPVLDCHT+HIA KF EL+ K+DRRSGK+LE  PK +K+GDA MVKM+  KPM VE F  YPP G FAVRDMRQTVAVGVIK+VEKK+
Sbjct:  330 ASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSVEKKE 437          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.844e-39
Identity = 77/111 (69.37%), Postives = 90/111 (81.08%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +E+ NFT+QVI+MNHPGQI  GY PVLDCHT+HIA KF EL  K+DRR+GK  E  PKFLK+GDAG+V++IP KP  VE+F DY P G FAVRDMRQTVAVGVIK+V K D
Sbjct:  336 KESKNFTAQVIVMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRTGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVTKDD 446          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.714e-39
Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = -1
Query:  419 ANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 742
            A+F +QVII+NHPG+I  GYAPVLDCHT+HIA KF EL+ K+DRRSGK+LE  PK +K+GDA MVKM+  KPM VE F  YPP G FAVRDMRQTVAVGVIK+VEKK+
Sbjct:  330 ASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKE 437          
The following BLAST results are available for this feature:
BLAST of CB290296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_CRYNE1.276e-3968.18Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A4_OSCTI1.276e-3969.37Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A2_SCHPO1.276e-3971.56Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A1_SCHPO1.276e-3971.56Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A1_OSCTI1.276e-3969.37Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A3_RHIRA2.177e-3971.17Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_STYLE2.844e-3966.67Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1AC_PORPU2.844e-3971.30Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A3_OSCTI2.844e-3969.37Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A_PORYE3.714e-3971.30Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01af04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290296 ID=CB290296; Name=CB290296; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTACCAAAAAATGTTTTACCCTGTTGTCTCATTTC
TCTCATATGATCGACAAAGTTAAAAACATCAAATGGAACCATCAAAAACA
GTCCCCCTTTCTCTCAGGGCAAAATTTAATACAACACCTACAAAATATAT
GAGCCCCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAAC
AAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACT
CTGATATAAAACCAAATTCAAAAAATTAAAATGAAGTCCCGTAAAACAAA
CTAAAACACAACAAAAATAGCATAAACAAAAAAAATAAAAGCTAACTATA
GCAAATAAATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAAACTTGGT
GACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAA
CAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACAACCAAAAGGGGGG
TAGTCAAAAAAGGTTTCAACAACCATGGGCTTGGGGGGAATCATCTTAAC
CATTCCAGCATCTCCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCT
TGCCTGATCGCCTATCAATCTTCGTCACAAGCTCAAAAAACTTGACGGCA
ATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTG
GCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCC
T
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