CB290330

Overview
NameCB290330
Unique NameCB290330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.887e-47
Identity = 96/158 (60.76%), Postives = 112/158 (70.89%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIP  FGGRR+NVFDPFSLD+WDPF  F          ++ E S F + R+DWKETP+AHVFKAD+PGL+         + R+LQISGER+ E+E+KND WH VERSSGKF RRFRLP+NAKV +VKASMENGVLTVT           KAIEI G
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFH----VPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.175e-46
Identity = 102/159 (64.15%), Postives = 119/159 (74.84%), Query Frame = -3
Query:  166 MSLIPSIFGGRR-TNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIP IFG RR T+VFDPFS+DV+DPF   L F ++N+     ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KND WH VERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEI G
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKE-LGFTVSNSG----ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.418e-46
Identity = 90/139 (64.75%), Postives = 108/139 (77.70%), Query Frame = -3
Query:  223 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 639
            MS+IPS F  +R+N+FDPFSLD WDPF G +S      P  ARET+   NARIDWKETP+AHV KADLPG++         +GR+LQISGER +EQEEK+D WH VERSSGKF+RRFRLP+NAK+++VKA MENGVLTV
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIIS----TEP--ARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.945e-46
Identity = 95/158 (60.13%), Postives = 111/158 (70.25%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIPSIFGG R+NVFDPFSLD+WDPF  F          ++ E S F N R+DWKET +AHV KAD+PGL+         + R+LQISGER+ E+E+KND WH V+RSSGKF+RRFRLP+NAKVEQVKA MENGVLTVT           K IEI G
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFH----VPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.945e-46
Identity = 99/157 (63.06%), Postives = 113/157 (71.97%), Query Frame = -3
Query:  166 RRTNVFDPFSLDVWDPFDGFL-----SFALTNAPFLAR----ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 609
            RR+NVFDPFSLD+WDPFDGF      S + +  P   R    ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G ILQISGER+KEQEEK D+WH VERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT           K+I+I G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.216e-45
Identity = 101/159 (63.52%), Postives = 118/159 (74.21%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTN-VFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIP IFG RR++ +FDPFS+DV+DPF   L F  TN+     ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KNDKW  VERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEI G
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRE-LGFPGTNSG----ETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.894e-45
Identity = 96/157 (61.15%), Postives = 112/157 (71.34%), Query Frame = -3
Query:  166 RRTNVFDPFSLDVWDPFDGFLSFALTNA-----PFLAR----ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 609
            RR+NVFDPFSLD+WDPFDGF   + + +     P   R    ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGERSKEQEEK DKWH VERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I++ G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.936e-45
Identity = 95/151 (62.91%), Postives = 107/151 (70.86%), Query Frame = -3
Query:  166 RRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQ---FANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 609
            RR+NVFDPFSLD+WDPFDGF  F   +     R  S    FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGER KEQEEK DKWH VERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGF-PFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.436e-44
Identity = 98/159 (61.64%), Postives = 117/159 (73.58%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTN-VFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIP IFG RR++ +FDPFS+DV+DPF   L F  TN+     E+S FAN RIDWKETP+ HVFK DLPGL+         E R+LQISGER+ E+E+KNDKWH +ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEI G
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRE-LGFPSTNSG----ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.199e-44
Identity = 91/148 (61.49%), Postives = 108/148 (72.97%), Query Frame = -3
Query:  166 RRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 609
            RR+NVFDPFSLD+WDPFD      +        +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWH VERSSG+F+RRFRLP+NAKV+QVKA MENGVLTVT           KAIEI G
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATS--DNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
The following BLAST results are available for this feature:
BLAST of CB290330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP14_SOYBN6.887e-4760.7617.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE1.175e-4664.1517.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_HELAN3.418e-4664.7517.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP15_SOYBN9.945e-4660.1317.6 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ORYSJ9.945e-4663.0617.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLPE2.216e-4563.5217.7 kDa class I heat shock protein OS=Solanum per... [more]
HS181_ORYSJ2.894e-4561.1518.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ4.936e-4562.9117.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLLC1.436e-4461.6417.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS16B_ORYSJ3.199e-4461.4916.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ag12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ag12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290330 ID=CB290330; Name=CB290330; organism=Citrus sinensis; type=EST; length=680bp
TCCTGAAACTCTTGTAAACACACAAACATAATCACATCAAATTAAACAGG
GGTGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTG
CTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATT
TACACTTATCACTTAGCCAAAGATCTCAATGGCCTTAACTTCAGGTTTCT
TCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTG
GCCTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAG
GAACTTGCCACTGCTCCTCTCGACGCAATGCCACTTGTCATTCTTCTCTT
CCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAAAATCCTGCCCTCTTCA
ACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAA
TACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATT
GGGATGTTTCCCTAGCCAAAAACGGCGCGTTGGTAAGGGCAAAGGACAAA
AACCCGTCGAAAGGATCCCATACATCTAATGAAAATGGATCGAACACGTT
GGTTCTTCGGCCACCGAAAATGCTTGGAATGAGTGACATTATGGCAAACT
GGGGCGCTAATTAAATGCTCAACAACTTCA
back to top