CB290330

Overview
NameCB290330
Unique NameCB290330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.178e-44
Identity = 95/162 (58.64%), Postives = 119/162 (73.46%), Query Frame = -3
Query:  169 MSLIPSIF--GGRRTNVFDPFSLD-VWDPFDGFLSFALTNAPF--LARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIF 639
            MSLIP+ +   GRR+N+FDPFSLD +WDPF G  S  L+  P    A ET+ FANARIDWKETP+AHVFKADLPG++         +G +L+ISG+R++E+EEKND WH VERSSG+F+R+FRLP+NAKV+QVKA MENGVLTVT           KAI ++
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFGLPS-TLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVPKNEAPKPQVKAINVY 161          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.127e-44
Identity = 90/148 (60.81%), Postives = 108/148 (72.97%), Query Frame = -3
Query:  166 RRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 609
            RR+NVFDPFSLD+WDPFD      +        +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWH VERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT           KAIEI G
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATS--DNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.588e-43
Identity = 93/149 (62.42%), Postives = 111/149 (74.50%), Query Frame = -3
Query:  166 RRTNVFDPFSLDVWDPFDG-FLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 609
            RR+NVFDPF+ D WDPFDG F S     +    R+T+ FANAR+DWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWH VERSSG+F+RRFRLP+NAKV+QVKASMENGVLTVT           KAIEI G
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVPATSD---RDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.034e-43
Identity = 92/155 (59.35%), Postives = 107/155 (69.03%), Query Frame = -3
Query:  166 RRTNVFDPFSLDVWDPFDGF-------LSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 609
            RR N FDPFSLD+WDP DGF        S + +  P    + + FA ARIDWKETP+ HVFKAD+PGL+         +G ILQISGERS+EQEEK+DKWH VERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I G
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 91/159 (57.23%), Postives = 111/159 (69.81%), Query Frame = -3
Query:  166 MSLIPSIFGG-RRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MS+IPS F   RR+N+FDPFSLDVWDPF    S +L+      RE S   NAR+DW+ETP+AHVFKADLPGL+         E  +L+ISGER  E+E+KND WH VERSSG+F RRFRLP+N K++QVKA+MENGVLTVT           K+I+I G
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLS------RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.647e-41
Identity = 89/151 (58.94%), Postives = 111/151 (73.51%), Query Frame = -3
Query:  166 RRTNVFDPFSLDVW-DPFDGFLSF--ALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 609
            RR+NVFDPF+ D+W DPFD F S   A++     + ET+ FANAR+DWKETP+AHVFK DLPG++         +G +L +SGERS+E+E+KNDKWH VERSSGKF+RRFRLP++AKVE+VKA +ENGVLTVT           KAIEI G
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGG---SSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.803e-40
Identity = 84/141 (59.57%), Postives = 103/141 (73.05%), Query Frame = -3
Query:  172 DPFSLDVWDPFDGF-LSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEI 591
            DPFSLDVWDPF  F  + +  +A    +E S F + RIDWKETP+AHVFKADLPGL+         + R+LQISGER+ E+E+KND+WH VERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT           K+IEI
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEI 141          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.781e-40
Identity = 89/151 (58.94%), Postives = 110/151 (72.85%), Query Frame = -3
Query:  166 RRTNVFDPFSLDVW-DPFDGFLSF--ALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 609
            RRTNVFDPF+ D+W DPFD F S   A++       ET+ FANAR+DWKETP+AHVFKADLPG++         +G +L +SGER+KE+E+KNDKWH VERSSGKF+RRFRL ++AKVE+VKA +ENGVLTVT           KAI+I G
Sbjct:    5 RRTNVFDPFA-DLWADPFDTFRSIVPAISGG---GSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.065e-39
Identity = 85/142 (59.86%), Postives = 103/142 (72.54%), Query Frame = -3
Query:  220 MSLIPSIFGGRR--TNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 639
            MSLIPS FG  R   ++FDPFSLDVWDPF   L F  +    L+ ETS   NAR+DWKET +AHVFKADLPG++         +  +L+ISGER  E+EEK D WH VERSSG+F R+F+LP+N K++QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKE-LQFPSS----LSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.391e-39
Identity = 84/143 (58.74%), Postives = 99/143 (69.23%), Query Frame = -3
Query:  220 MSLIPSIFGGRR---TNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 639
            MSLIPS FG  R    N+FDPFSLDVWDPF            F +  +S  ANAR+DWKET +AHVFKADLPG++         +  +L+ISGER  E+EEK D WH VERSSG F R+FRLP+N K++QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFK--------ELQFPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of CB290330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP11_CHERU4.178e-4458.6418.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS16A_ORYSJ7.127e-4460.8116.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS16C_ORYSJ1.588e-4362.4216.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS177_ORYSJ6.034e-4359.3517.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17B_ARATH7.880e-4357.2317.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS16A_WHEAT5.647e-4158.9416.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP11_MEDSA2.803e-4059.5718.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS16B_WHEAT4.781e-4058.9416.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS178_ARATH1.065e-3959.8617.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH1.391e-3958.7417.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ag12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ag12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290330 ID=CB290330; Name=CB290330; organism=Citrus sinensis; type=EST; length=680bp
TCCTGAAACTCTTGTAAACACACAAACATAATCACATCAAATTAAACAGG
GGTGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTG
CTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATT
TACACTTATCACTTAGCCAAAGATCTCAATGGCCTTAACTTCAGGTTTCT
TCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTG
GCCTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAG
GAACTTGCCACTGCTCCTCTCGACGCAATGCCACTTGTCATTCTTCTCTT
CCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAAAATCCTGCCCTCTTCA
ACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAA
TACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATT
GGGATGTTTCCCTAGCCAAAAACGGCGCGTTGGTAAGGGCAAAGGACAAA
AACCCGTCGAAAGGATCCCATACATCTAATGAAAATGGATCGAACACGTT
GGTTCTTCGGCCACCGAAAATGCTTGGAATGAGTGACATTATGGCAAACT
GGGGCGCTAATTAAATGCTCAACAACTTCA
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