CB290330

Overview
NameCB290330
Unique NameCB290330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.305e-29
Identity = 78/154 (50.65%), Postives = 91/154 (59.09%), Query Frame = -3
Query:  166 RRTNVFDPFSLDVW---DPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEE--KND-KWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 609
            R  NV DP S+D W   DPF    S        LA       N R+DWKETP AHVF ADLPG+R         +G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT           KAI I G
Sbjct:    5 RSGNVLDPMSVDFWADADPFGAVRS--------LAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = -3
Query:  220 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 489
            AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+E+K D WH VERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = -3
Query:  220 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 495
            ++AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+++K D WH VERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23
Identity = 58/134 (43.28%), Postives = 83/134 (61.94%), Query Frame = -3
Query:  220 GGRRTNVFDPFSLDVWDPFDGFLSF-ALTNAPFLARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 615
            GG      +P S+D+ +PF   +S  A   AP  A   +   + A +DWKET  AHVF AD+PG+R         E ++L+ISG+R++  EEK ++WH VERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.545e-22
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = -3
Query:  223 LARETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 519
            L R+TS   + AR+DWKET + H    D+PGL+         E  +L++SGER +E+E+K D+WH VERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   60 LERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.442e-22
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = -3
Query:  220 VFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 597
            +FD  + D W+PF  F +    +A +LA +TS FAN  I+ +ET +A+VF+ADLP G++         EG +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.491e-21
Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = -3
Query:  166 ILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 387
            ILQISGER+ E+E+KND WH VERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT           KAIEI G
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 57/154 (37.01%), Postives = 84/154 (54.55%), Query Frame = -3
Query:  223 LSI*LAPQFAIMSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQ--EEKN--DKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 672
            +++ LA   A  +L+P   GG   +   P  L +    D F         F   + +  + AR+DW+ET  AH    D+PG+R         + R+L+ISGER +E+  E+K   D WH  ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   16 IAVVLASTAADGALLPWFGGGGARDEAVP-ELGLLAAADPFRILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = -3
Query:  220 ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEG-RILQISGER-----SKEQEEKND--KWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 516
            A E +  A AR DWKETP+AHV   D+PG+R         E  R+L++SGER     ++E+E + D  +WH  ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   63 AGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  223 PFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLTV 525
            PF   +    + A IDW E+  +H+FK ++PG           EG +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLTV
Sbjct:   10 PFRRFQEWSRSTALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTV 115          
The following BLAST results are available for this feature:
BLAST of CB290330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ1.305e-2950.6516.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN4.803e-2456.6722.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA4.803e-2454.3522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HS189_ORYSJ3.113e-2343.2818.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH1.545e-2251.0022.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS17B_ORYSJ3.442e-2245.6717.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HSP12_SOYBN6.491e-2171.62Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS232_ORYSJ8.773e-1837.0123.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ7.427e-1745.7921.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH4.814e-1642.4515.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ag12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ag12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290330 ID=CB290330; Name=CB290330; organism=Citrus sinensis; type=EST; length=680bp
TCCTGAAACTCTTGTAAACACACAAACATAATCACATCAAATTAAACAGG
GGTGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTG
CTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATT
TACACTTATCACTTAGCCAAAGATCTCAATGGCCTTAACTTCAGGTTTCT
TCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTG
GCCTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAG
GAACTTGCCACTGCTCCTCTCGACGCAATGCCACTTGTCATTCTTCTCTT
CCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAAAATCCTGCCCTCTTCA
ACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAA
TACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATT
GGGATGTTTCCCTAGCCAAAAACGGCGCGTTGGTAAGGGCAAAGGACAAA
AACCCGTCGAAAGGATCCCATACATCTAATGAAAATGGATCGAACACGTT
GGTTCTTCGGCCACCGAAAATGCTTGGAATGAGTGACATTATGGCAAACT
GGGGCGCTAATTAAATGCTCAACAACTTCA
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