CB290330

Overview
NameCB290330
Unique NameCB290330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 47/135 (34.81%), Postives = 75/135 (55.56%), Query Frame = -3
Query:  220 RRTNVFDPFS----LDVWDPFDGFLSFALTNAPFLARETSQFANA-RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 609
            +RT  +DPF     L  WDPF+      L N P+ A      A     + +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVLT+T
Sbjct:   15 QRTREWDPFQQMQELMNWDPFE------LANHPWFANRQGPPAFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  220 NAP--FLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 531
            NAP     R+    A    D KE P ++VF  D+PGL+         E  +L ISGER +E+E++  K+  +ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  220 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQI--------------SGERSKEQEEKND--KWHCVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 495
            A   +DW+ETP AHVF+ DLPGL          +G IL++              +G+ S E+EE+ND  +WHC ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = -3
Query:  220 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 513
            R+    A    D KE P A+ F  D+PGL          + R+L +SGER +E+ E + K+  +ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   47 RDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  220 NAPF--LARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 531
            NAP     R+    A    D KE P ++VF  D+PG++         +  +L ISGER +E+E++  K+  +ER  GK +R+F LP+NA +E + A  ++GVLTVT
Sbjct:   27 NAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 45/119 (37.82%), Postives = 61/119 (51.26%), Query Frame = -3
Query:  223 FDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGER-----SKEQE-EKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 561
            F G     L   PF     S  A A +DW ETP +HV + ++PGL          +G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = -3
Query:  220 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 513
            R+    A    D KE P ++VF  D+PGL+            +L ISG+R++E+E++  K+  +ER  GKF+++F LP++A  +++ A  ++GVLTVT
Sbjct:   43 RDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  220 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSK----EQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 513
            R+    A    D K+ P A+ F  D+PGL+         E R+L ISGER +    E++E++ K+  +ER  GKF+R+F LPDNA V+++ A  ++GVLTVT
Sbjct:   45 RDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = -3
Query:  220 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND--KWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 513
            R+    A    D KE P ++VF AD+PG++         +  +L +SGER++ ++++ D  K+  +ER  GKF+R+F LP+NA VE + A  ++GVL VT
Sbjct:   48 RDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVT 147          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  220 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 480
            D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+  +ER  GK +R+F LP+NA  E++ A  ++GVLTVT
Sbjct:   48 DVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of CB290330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SP21_STIAU1.549e-1434.81Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HSP21_SOLPE2.023e-1440.5717.3 kDa class II heat shock protein OS=Solanum pe... [more]
HS178_ORYSJ2.642e-1439.6417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_MAIZE4.506e-1442.8617.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_PEA1.311e-1338.6817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP16_ORYSJ2.921e-1337.8216.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HSP21_HELAN4.982e-1336.7317.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP18_ORYSJ6.507e-1341.1818.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP22_IPONI1.893e-1238.0018.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_IPONI3.229e-1244.3217.2 kDa class II heat shock protein OS=Ipomoea ni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ag12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ag12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290330 ID=CB290330; Name=CB290330; organism=Citrus sinensis; type=EST; length=680bp
TCCTGAAACTCTTGTAAACACACAAACATAATCACATCAAATTAAACAGG
GGTGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTG
CTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATT
TACACTTATCACTTAGCCAAAGATCTCAATGGCCTTAACTTCAGGTTTCT
TCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTG
GCCTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAG
GAACTTGCCACTGCTCCTCTCGACGCAATGCCACTTGTCATTCTTCTCTT
CCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAAAATCCTGCCCTCTTCA
ACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAA
TACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATT
GGGATGTTTCCCTAGCCAAAAACGGCGCGTTGGTAAGGGCAAAGGACAAA
AACCCGTCGAAAGGATCCCATACATCTAATGAAAATGGATCGAACACGTT
GGTTCTTCGGCCACCGAAAATGCTTGGAATGAGTGACATTATGGCAAACT
GGGGCGCTAATTAAATGCTCAACAACTTCA
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