CB290336

Overview
NameCB290336
Unique NameCB290336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.314e-47
Identity = 105/207 (50.72%), Postives = 130/207 (62.80%), Query Frame = -1
Query:  273 MVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNWALVSMNHDTQSCMDPNVMEAK---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 824
            MV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +         V GVVTNW LV+  H TQ CMDPNV+E                 V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  116 MVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.647e-30
Identity = 79/188 (42.02%), Postives = 108/188 (57.45%), Query Frame = -1
Query:  261 MVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 824
            +VV++ A   LDE G+DY +  N + +  +    ST+ SK + +   K+FN V  EDL+VK GRV G+V NW  V M   T   +DP  +EAK VV S GH    GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:   72 VVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMVEVEDLVVKDGRVSGLVINWTPVMM---TGLHVDPLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.809e-30
Identity = 79/186 (42.47%), Postives = 105/186 (56.45%), Query Frame = -1
Query:  267 MVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 824
            +VV+  A   LDE GI Y+E +    +  A    +TI SK++ +  VK+FN +  EDL++K  RV G+V NW  V M       +DP  +EAK V+ S GH        VKR    G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:   73 VVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMIEVEDLVIKDNRVSGIVINWTPVLM---AGLHVDPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.173e-30
Identity = 80/187 (42.78%), Postives = 106/187 (56.68%), Query Frame = -1
Query:  264 MVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 824
            +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN V  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:   73 IVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMVEVEDLVVKDDRVSGIVINWTPVKM---TGLHVDPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.378e-29
Identity = 80/186 (43.01%), Postives = 104/186 (55.91%), Query Frame = -1
Query:  267 MVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 824
            +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN +  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:   73 VVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMIEVEDLVVKDNRVSGIVINWTPVLM---TGLHVDPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.641e-25
Identity = 68/187 (36.36%), Postives = 104/187 (55.61%), Query Frame = -1
Query:  264 MVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 824
            + +R PA   LDEL + Y+     +      L  + + ++ L     ++ N    +D+IV+  RV GVV NW+ V       +C+DP  + A+ VV + GHD    A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:   77 VTIRAPAQRILDELEVPYEAVKPGLYRTKGPLLAAKLAARAL-EAGAEVLNLTMLDDVIVENSRVAGVVVNWSPVQGLPRQITCVDPVGLRAEYVVDATGHD----AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.803e-22
Identity = 75/216 (34.72%), Postives = 109/216 (50.46%), Query Frame = -1
Query:  261 MVVRKPAHIFLDELGIDYDEQDN----YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 824
            + VR PA   LDEL + Y+E D     YV     A+ +S I S   A   V+  N     D++ +   RVGG+V NW  V       +C+DP  +E+ +VV S GHD          G   A G++     + GM             + PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:   80 VTVRDPAQSVLDELDVPYEESDEASGLYVADGPHAV-SSLIKSACDAGAEVQ--NMTEFTDVVTRENHRVGGIVLNWTPVHALPRELTCVDPVAVESDLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.635e-20
Identity = 66/190 (34.74%), Postives = 104/190 (54.74%), Query Frame = -1
Query:  267 MVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWA-LVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE---EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 824
            +V+ K    FL E+ I+Y+ +++++V+  +  F S ++ +   +    +FN V+ ED+ V+ GRV GVV NW   V +       +DP  ++A  VV   GH     A  V  L   G++E   E P    +D + AE  +V  T E+ PG++V+GM V  + G PRMGP FG M++SGQK A +  + L
Sbjct:   74 IVLEKELENFLKEVEIEYEVKEDHIVVD-SVHFASGLLYRA-TKAGAIVFNNVSVEDVAVQNGRVCGVVVNWGPTVRLGLH----VDPITVKASFVVDGTGHP----ANVVSLLAKRGLVEMKTEFP----MDADEAEKFVVDNTGEIFPGLLVSGMAVCAVHGGPRMGPIFGGMILSGQKVARIVSERL 249          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.442e-20
Identity = 69/195 (35.38%), Postives = 98/195 (50.26%), Query Frame = -1
Query:  261 MVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI-----GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 824
            +VV+K A   LDE  I Y E ++ Y V     +        + A    +L N V+ ED++++ G R+ G+V NW    M       +DP  + A+VV+   GHD        K++        G+I E P   AL     E  +V  TREV PG+IV GM    +   PRMGP FG M++SG+KAA +AL+ L Q
Sbjct:   74 IVVQKEACRILDEYDIWYREFEEGYYVADSIEVVAKLTAGAIDA--GAELINLVSVEDVMIREGDRIVGLVINWTAADM---AGIHVDPLAIRARVVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.442e-20
Identity = 70/215 (32.56%), Postives = 104/215 (48.37%), Query Frame = -1
Query:  267 MVVRKPAHIFLDELGIDY----DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE------------------------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 824
            + VR PA   LDEL +D+    D +  YV     A    + + K       K+ N     D++++   RVGG+V NW  V       +C+DP  +EA +V+ + GHD    A  VK+L   G++                         + PG  ++ +  +EDA+V  T     G++VTGM  A   G PRMGPTFGAM++SG++AA +AL  L
Sbjct:   84 VTVRDPAQQVLDELEVDHKRSKDSEGLYVANGPEAC---SGLIKAACDAGAKMQNMTEFTDIVIREDHRVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHD----AMAVKKLDERGVLNAPGLEDEASGMDQTDDDTYGAPGHDSPGHDSMWVGESEDAVVEHTGLAHDGLVVTGMATATTYGLPRMGPTFGAMLVSGKRAAQVALDEL 291          
The following BLAST results are available for this feature:
BLAST of CB290336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
THI4_YEAST4.314e-4750.72Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRKO1.647e-3042.02Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRHO2.809e-3042.47Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU8.173e-3042.78Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB2.378e-2943.01Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE4.641e-2536.36Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_HALWD4.803e-2234.72Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_THEMA2.635e-2034.74Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_METTP3.442e-2035.38Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_HALMA3.442e-2032.56Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290336 ID=CB290336; Name=CB290336; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTTTTGACCGGAAACAACACTTTATTCACAAAACCTCA
CAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAATA
CAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGA
TGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAGC
TGCAGCTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTACCGTCTA
ATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGC
CCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCACCATC
AATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCC
TGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTC
ATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTCC
AGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTCG
CTTCCATTACATTGGGATCCATGCAAGACTGTGTATCGTGATTCATTGAC
ACCAACGCCCAGTTGGTCACCACACCACCAACTCTGCCGCCTTTGACTAT
CAAGTCCTCGGCTGCCACTGCATTAAAGAGCTTGACGTTGGGGCGGGCCA
GGAGCTTGCTCATTATAGTGGAGGTGAACAGCGCTGCATGCTTGATCACA
ACATAGTTGTCTTGCTCATCGTAGTCGATGCCAAGCTCGTCAAGGAAGAT
GTGGGCTGGTTTGCGCACAACCAT
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