CB290336

Overview
NameCB290336
Unique NameCB290336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_METJA (Putative thiazole biosynthetic enzyme OS=Methanocaldococcus jannaschii GN=MJ0601 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.354e-15
Identity = 61/187 (32.62%), Postives = 90/187 (48.13%), Query Frame = -1
Query:  267 MVVRKPAHIFLDELGIDY-DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 824
            +VV +PA   L E+GI   D  D Y V     +     ++ + A    K+   +  EDLI++   V GVV N   +         +DP  + +KVVV + GH+       VK+ K   +  +VPG K++     E+A++R TREV P + V GM      G  RMG  FG M +SG+  A L  + L
Sbjct:   81 IVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDA--GAKILTGIVVEDLILREDGVAGVVINSYAIER---AGLHIDPLTIRSKVVVDATGHEASIVNILVKKNK---LEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKL 259          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_THENV (Putative thiazole biosynthetic enzyme OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1052 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.655e-14
Identity = 47/141 (33.33%), Postives = 76/141 (53.90%), Query Frame = -1
Query:  267 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 683
            K+   V  +D+I +G   RV G++  W  + M+    S +DP   +A+ V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+   GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  117 KIILGVHVDDVIFRGDPPRVAGLLWVWTPIQMSG---SHVDPLYTQARAVLDATGHDAEVISIASRKVPELGV--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYAAGMAVCAVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_PYRCJ (Putative thiazole biosynthetic enzyme OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.655e-14
Identity = 45/143 (31.47%), Postives = 76/143 (53.15%), Query Frame = -1
Query:  261 KLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 683
            K+   V  +D+I +G   RV G++  W  + M+      +DP   +AK V+ + GHD    +   +++  +G+  ++ G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L +
Sbjct:  117 KILLGVHVDDVIFRGDPPRVAGLLWIWTPIQMSG---MHVDPLYTQAKAVIDATGHDAEVVSVAARKVPELGL--QLQGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGRKVAEVVAKDLAE 254          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_PYRAE (Putative thiazole biosynthetic enzyme OS=Pyrobaculum aerophilum GN=PAE0175 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.822e-14
Identity = 55/189 (29.10%), Postives = 92/189 (48.68%), Query Frame = -1
Query:  267 MVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 824
            +VV++ A   L +  + Y   +D    +  A L        + A    K+   V  +D+I +G   RV G++  W  + M+      +DP   +AK V+ + GHD    +   +++  +G+  +V G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L
Sbjct:   71 IVVQEEAVPILRDFKVRYKPAEDGLYTVDPAELIAKLAAGAVDA--GAKIILGVHVDDVIFRGDPPRVTGLLWIWTPIQMSG---MHVDPLYTQAKAVIDATGHDAEVVSVAARKVPELGI--QVVGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGKKVAEVVYKDL 252          
BLAST of CB290336 vs. ExPASy Swiss-Prot
Match: THI4_DESMR (Putative thiazole biosynthetic enzyme OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=DMR_31420 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.004e-11
Identity = 59/195 (30.26%), Postives = 102/195 (52.31%), Query Frame = -1
Query:  264 MVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR--LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQK-AAHLALKSLG 824
            +VV++ +   L ++G+     +DNY      A  T+   +  LA    K+FN ++ ED++++      RV G+V N + V +       +DP V+ +K +V + GH      T V++  ++       + G +++  ++AE   V+ TRE+ PG+ V GM      G+ RMGP FG M++SG+K AA +A K  G
Sbjct:   74 IVVQEESVHLLTDVGVPVKRYKDNYFTADAVAATTTLASAACLA--GAKIFNCMSVEDVMLREENGVKRVTGIVINSSPVEI---AGLHVDPVVLGSKYLVEATGHAVEVLQTLVRKNDVRLNTPSGGIEGEQSMWADTAEINTVKNTREIFPGLYVAGMAANASYGSYRMGPIFGGMLLSGEKVAADIAAKLKG 263          
The following BLAST results are available for this feature:
BLAST of CB290336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
THI4_METJA4.354e-1532.62Putative thiazole biosynthetic enzyme OS=Methanoca... [more]
THI4_THENV1.655e-1433.33Putative thiazole biosynthetic enzyme OS=Thermopro... [more]
THI4_PYRCJ1.655e-1431.47Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_PYRAE2.822e-1429.10Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_DESMR1.004e-1130.26Putative thiazole biosynthetic enzyme OS=Desulfovi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ah03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290336 ID=CB290336; Name=CB290336; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTTTTGACCGGAAACAACACTTTATTCACAAAACCTCA
CAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAATA
CAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGA
TGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAGC
TGCAGCTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTACCGTCTA
ATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGC
CCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCACCATC
AATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCC
TGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTC
ATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTCC
AGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTCG
CTTCCATTACATTGGGATCCATGCAAGACTGTGTATCGTGATTCATTGAC
ACCAACGCCCAGTTGGTCACCACACCACCAACTCTGCCGCCTTTGACTAT
CAAGTCCTCGGCTGCCACTGCATTAAAGAGCTTGACGTTGGGGCGGGCCA
GGAGCTTGCTCATTATAGTGGAGGTGAACAGCGCTGCATGCTTGATCACA
ACATAGTTGTCTTGCTCATCGTAGTCGATGCCAAGCTCGTCAAGGAAGAT
GTGGGCTGGTTTGCGCACAACCAT
back to top