CB290339

Overview
NameCB290339
Unique NameCB290339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.195e-26
Identity = 74/162 (45.68%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  265 DSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 750
            DS   ++ L N  D  YFGEIGIG+PPQ F+VIFDTGSS LWVPSSK         HS Y+S  S+TY E                                  FIEAT E    FL   FDGI+GL F+ I    +VPVW NMV QGLV    FSFWLNR+
Sbjct:    1 DSGSTVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSYLWVPSSKA--------HSMYESSDSSTYKE--------------------------------QDFIEATEEADNVFLNRLFDGILGLSFQTI----SVPVWYNMVNQGLVKR--FSFWLNRN 116          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.803e-25
Identity = 73/162 (45.06%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  265 DSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 750
            DS   ++ L N  D  Y+GEIGIG+PPQ F+VIFDTGSS LWVPSSK         HS Y+S  S+TY                    SQ              FIEAT E    FL   FDGI+GL F+ I    +VPVW NM+ QGLV    FSFWLNR+
Sbjct:    2 DSGSAVVALTNDRDTSYYGEIGIGTPPQKFTVIFDTGSSVLWVPSSKA--------HSMYESSGSSTYK-------------------SQDSVTIGDLVVKEQDFIEATEEADNVFLNRLFDGILGLSFQTI----SVPVWYNMLNQGLVKR--FSFWLNRN 130          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.946e-25
Identity = 73/162 (45.06%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  265 DSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 750
            DS   ++ L N  D  YFGEIGIG+PPQ F+VIFDTGSS LWVPSSK         HS Y+S  S+TY E                                  FIEAT E    FL   FDGI+GL F+ I    +VPVW NM+ QGLV    FSFWLNR+
Sbjct:    1 DSGSAVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKA--------HSMYESSGSSTYKE--------------------------------QDFIEATDETDNVFLHRLFDGILGLSFQTI----SVPVWYNMLNQGLVKR--FSFWLNRN 116          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: PLM1_PLAFA (Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.168e-24
Identity = 62/160 (38.75%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  277 DILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 750
            D + L +  +  Y+GE  IG   Q F+ IFDTGS+NLWVPS++C  +I C   + Y S KS TY + G   E+NY SG++SGFFS+              FIE T        + L +FDGI+GLG++++++G   PV   +  Q  + + VF+F+L  D
Sbjct:  127 DSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSK-DIVTIANLSFPYKFIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFD 284          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: PLM1_PLAF7 (Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0076 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.168e-24
Identity = 62/160 (38.75%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  277 DILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 750
            D + L +  +  Y+GE  IG   Q F+ IFDTGS+NLWVPS++C  +I C   + Y S KS TY + G   E+NY SG++SGFFS+              FIE T        + L +FDGI+GLG++++++G   PV   +  Q  + + VF+F+L  D
Sbjct:  127 DSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSK-DIVTIANLSFPYKFIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFD 284          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: PEPAF_RABIT (Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 60/160 (37.50%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  265 DSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLN 744
            D D    PL+N++D  Y G I IG+PPQ F V+ DTGS++LWVPS  C  S +C  H+ +    S+T+   G+   I YGSG +SGF +               F  + +E       A FDGI+GL +  ++     PV+DN+  QGL+S+ +F+F+L+
Sbjct:   58 DPDVSFEPLRNYLDLAYIGIISIGTPPQEFKVVLDTGSADLWVPSIYC-SSPACGKHNTFNPLLSSTFLVSGRPINIVYGSGRMSGFLAYDTVQIAGLVDVAQAFGLSLQEPGKFMEYAVFDGILGLSYPSLSFEGITPVFDNLWAQGLISQNLFAFYLS 216          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: PAG1_SHEEP (Pregnancy-associated glycoprotein 1 OS=Ovis aries GN=PAG1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 60/163 (36.81%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  268 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSIS--CYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 750
            S+  I PL+N MD  Y G I IG+PPQ F V+FDTGSS+L VPS  C       C    ++K  +S+T+     +  I +GSG++ GF +               F     E   ++L   FDGI+GL + +I+   A+P++D +  +G  SE VF+F+LN+D
Sbjct:   56 SNLTIHPLRNIMDMLYVGNITIGTPPQEFQVVFDTGSSDLLVPSINCLSPTKRPCSKQDKFKHHQSSTFRFTNDTFRIYFGSGTMRGFVAHDTVRIGDLVSTDQPFGLIFLE---SWLDIPFDGILGLNYPKISFSGAIPIFDKLKNEGAFSEPVFAFYLNKD 215          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: PAG1_BOVIN (Pregnancy-associated glycoprotein 1 OS=Bos taurus GN=PAG1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 56/155 (36.13%), Postives = 84/155 (54.19%), Query Frame = 1
Query:  286 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 750
            PL+N  D  Y G I IG+PPQ F V+FDT SS+LWVPS  C  S +C  H R++  +S+T+    K+  I YGSG + G                  F  +  E      +  +DG++GL +  I+   A+P++D +  Q  +SE VF+F+L++D
Sbjct:   62 PLRNIKDLVYMGNITIGTPPQEFQVVFDTASSDLWVPSDFC-TSPACSTHVRFRHLQSSTFRLTNKTFRITYGSGRMKGVVVHDTVRIGNLVSTDQPFGLSIEEYGFEGRI--YDGVLGLNYPNISFSGAIPIFDKLKNQRAISEPVFAFYLSKD 213          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: PLM2_PLAFA (Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 59/163 (36.20%), Postives = 91/163 (55.83%), Query Frame = 1
Query:  259 LGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEA--TREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL 741
            LG S+++I  L +F +  ++G+  +G   Q F+ I DTGS+NLWVPS KC  +  C     Y S KS TY + G   E+NY SG++SGFFS+              FIE   T     T+  + FDGI+GLG++++++G   P+   +  Q  +   +F+F+L
Sbjct:  123 LGSSNDNI-ELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKC-TTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSK-DLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 282          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: PAG1_PIG (Pregnancy-associated glycoprotein 1 OS=Sus scrofa GN=PAG1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 58/167 (34.73%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  244 GVRHRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLN 744
            G++  L       L L N++D  Y G I IG+PPQ FSVIFDT SS+LWVPS++C+ S +C  H  +    S+T+    ++ ++   SG +SG                  F  +  E       A FDG++GLG+  +A+    PV+DN+ +QG + E VF+ +L+
Sbjct:   53 GLKGSLCSPKISCLRLWNYLDMVYVGNITIGTPPQLFSVIFDTASSDLWVPSNQCH-SRACVTHRSFNPTLSSTFQSSNRTVKLAPHSGLVSGLLGYDTVQIGRFKSENQAFGLSQSEPVKELENAFFDGVLGLGYPSLAIQGTTPVFDNLRKQGQIPEPVFALYLS 218          
The following BLAST results are available for this feature:
BLAST of CB290339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CARDG_CYNCA6.195e-2645.68Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDF_CYNCA1.803e-2545.06Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDH_CYNCA8.946e-2545.06Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PLM1_PLAFA1.168e-2438.75Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2[more]
PLM1_PLAF71.168e-2438.75Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7... [more]
PEPAF_RABIT1.526e-2437.50Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1[more]
PAG1_SHEEP3.182e-2236.81Pregnancy-associated glycoprotein 1 OS=Ovis aries ... [more]
PAG1_BOVIN3.182e-2236.13Pregnancy-associated glycoprotein 1 OS=Bos taurus ... [more]
PLM2_PLAFA1.209e-2136.20Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1[more]
PAG1_PIG2.062e-2134.73Pregnancy-associated glycoprotein 1 OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290339 ID=CB290339; Name=CB290339; organism=Citrus sinensis; type=EST; length=753bp
GCCGTTAAGCTTCCTTTACTTTGCTTCAAACTCAGCTTCAGCCGAAAACC
AAAGAACATCATGGAGCAGAAACTTCTTCGGTCAGTTTTCTGTTTATGGG
TGCTAGCGTCGTGCTTGCTTCTTCCTGCTTCCTCTAATGGCTTACGGAGA
ATTGGCTTGAAGAAGCGGCGACTAGATCTTCATAGTCTAAATGCTGCAAG
AATAACAAGAAAAGAGCGATATATGGGGGGAGCAGGTGTTAGTGGCGTGC
GCCATCGTTTGGGTGATTCAGATGAAGATATATTGCCTTTGAAGAACTTT
ATGGATGCTCAATACTTTGGAGAGATTGGTATTGGCTCTCCCCCACAAAA
TTTCAGTGTCATATTTGATACCGGCAGTTCCAATCTCTGGGTTCCATCTT
CAAAGTGCTATTTCTCTATTTCCTGCTATTTCCATTCGAGGTACAAGTCC
AGAAAATCCAATACATATACCGAAATTGGAAAATCCTGTGAAATAAACTA
TGGATCTGGATCAATTTCTGGCTTCTTCAGTCAAGACAATGTTGAAGTTG
GGGATGTTGTTGTCAAGGATCAGGTTTTCATTGAGGCTACACGAGAAGGG
AGTCTCACTTTTCTATTGGCAAGGTTTGATGGAATAATAGGGCTTGGGTT
CCGGGAAATTGCAGTTGGGGATGCTGTGCCTGTGTGGGACAATATGGTTG
AGCAGGGCCTTGTAAGCGAGGAGGTCTTCTCATTCTGGCTCAACAGGGAT
CCA
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